View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10021_high_5 (Length: 379)

Name: NF10021_high_5
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10021_high_5
NF10021_high_5
[»] scaffold0536 (5 HSPs)
scaffold0536 (189-372)||(6267-6450)
scaffold0536 (22-142)||(6497-6617)
scaffold0536 (189-369)||(10254-10432)
scaffold0536 (22-107)||(10514-10599)
scaffold0536 (233-315)||(1278-1360)
[»] chr4 (8 HSPs)
chr4 (189-352)||(48912121-48912284)
chr4 (22-142)||(48912331-48912451)
chr4 (189-350)||(48958384-48958545)
chr4 (22-142)||(48958217-48958337)
chr4 (189-372)||(48965566-48965749)
chr4 (22-142)||(48965402-48965519)
chr4 (22-142)||(48961366-48961486)
chr4 (192-226)||(48974349-48974383)
[»] chr6 (3 HSPs)
chr6 (189-352)||(12589945-12590108)
chr6 (189-370)||(12483222-12483403)
chr6 (22-108)||(12590192-12590278)
[»] chr2 (5 HSPs)
chr2 (189-347)||(13448600-13448758)
chr2 (50-142)||(13448464-13448553)
chr2 (50-142)||(13440301-13440390)
chr2 (54-142)||(13454939-13455024)
chr2 (272-348)||(13455154-13455230)
[»] chr7 (2 HSPs)
chr7 (190-302)||(3417356-3417468)
chr7 (50-142)||(3417516-3417605)
[»] chr8 (1 HSPs)
chr8 (22-142)||(12641467-12641587)
[»] chr5 (3 HSPs)
chr5 (189-302)||(28385571-28385684)
chr5 (53-138)||(28385438-28385520)
chr5 (50-100)||(12540786-12540836)


Alignment Details
Target: scaffold0536 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 189 - 372
Target Start/End: Complemental strand, 6450 - 6267
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6450 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 6351  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctctgctt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  6350 acaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgctt 6267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 6617 - 6497
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6617 aatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 6518  T
Q  122 ttcgaatccctttggcaacca 142  Q
    |||||||||||||||||||||    
T  6517 ttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 369
Target Start/End: Complemental strand, 10432 - 10254
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    |||||||| ||||  |||| || |||||||||||||| ||  || |||||||| |||||||||||||| |  |||   |||| |||||||||||| ||||    
T  10432 ggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgt 10333  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctctg 369  Q
    ||||||||||  ||||| ||||| |||  ||||||||||||||||| ||||||||||||||||| |||| ||| |||||||    
T  10332 acaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctctctg 10254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 10599 - 10514
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt 107  Q
    |||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| |||||||||||||||||||||||    
T  10599 aatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttcttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 1360 - 1278
Alignment:
Q  233 tgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagttatctggcttcgagt 315  Q
    ||||||||| || | ||||||||| ||||||  ||| ||| |||||||||||||||| |  |||||||||||| |||| ||||    
T  1360 tgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagt 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 189 - 352
Target Start/End: Complemental strand, 48912284 - 48912121
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||||||||||||||    
T  48912284 ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgt 48912185  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 352  Q
    ||| ||| ||||||||| | |||||||  |||||||||| ||||||||||||||||||||||||    
T  48912184 acaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact 48912121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 48912451 - 48912331
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 121  Q
    |||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||    
T  48912451 aatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctc 48912352  T
Q  122 ttcgaatccctttggcaacca 142  Q
    ||| || ||||||||||||||    
T  48912351 ttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 350
Target Start/End: Original strand, 48958384 - 48958545
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    |||||||||||||  |||| |||||| ||||||||||||||||| |||||||| |||||||||||||| |  |||   |||| |||||||||||||||||    
T  48958384 ggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgt 48958483  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaaca 350  Q
    ||||||||||||||| |  |||| |||  ||||||||||||||  | |||||||| ||||||    
T  48958484 acaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaaca 48958545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 48958217 - 48958337
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 121  Q
    |||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| ||||||||||| || ||||||||    
T  48958217 aatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctc 48958316  T
Q  122 ttcgaatccctttggcaacca 142  Q
    ||||||||| || ||||||||    
T  48958317 ttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 372
Target Start/End: Original strand, 48965566 - 48965749
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    |||| ||||||||| || |  |||||||||||||||||  |||| |||||||| ||||| ||||||||| |  || | || | ||||||||||| |||||    
T  48965566 ggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgt 48965665  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctctgctt 372  Q
    ||||||||||||||| | |||| || |  |||||||||| |||||| ||||| |||||  |||| | |||||||||||||||||    
T  48965666 acaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgctt 48965749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 48965402 - 48965519
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 121  Q
    |||| |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||   ||||||||| || ||||||||    
T  48965402 aatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttctttccaatgtttctctc 48965498  T
Q  122 ttcgaatccctttggcaacca 142  Q
    ||||||||||||||| |||||    
T  48965499 ttcgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 48961366 - 48961486
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 121  Q
    |||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || ||||||||    
T  48961366 aatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctc 48961465  T
Q  122 ttcgaatccctttggcaacca 142  Q
    ||| ||||| || ||||||||    
T  48961466 ttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 48974349 - 48974383
Alignment:
Q  192 acaacccatatgaatttgtgacccgatgcttctat 226  Q
    |||||||||||||||| ||||||||||||||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctat 48974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 352
Target Start/End: Complemental strand, 12590108 - 12589945
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    |||| |||||||| ||||| ||| || ||||||||||| ||||| | |||||| |||||||||||||| | ||||  ||||| ||| |||||||||||||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 352  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||| |||||  ||||||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacact 12589945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 370
Target Start/End: Complemental strand, 12483403 - 12483222
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    |||||||||||||||||||| | ||||||||||||||| || |||| ||| |||||||| |||||||| | ||||  ||||| ||| |||||||||||||    
T  12483403 ggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgt 12483304  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctctgc 370  Q
    |||||||||| || ||| |||| |||| |||||||||  ||||||| ||||| ||||||||||| |  | ||||||||||||    
T  12483303 acaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacactctcgtttcccctctctgc 12483222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 12590278 - 12590192
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttc 108  Q
    |||| ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  12590278 aatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttc 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 13448600 - 13448758
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    ||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||| ||||||||||| |  |||  |   | ||||||||| |||||||    
T  13448600 ggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgt 13448699  T
Q  289 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcaca 347  Q
    |||||||||||||| ||  ||  || || ||||||||||| | |||||||||| |||||    
T  13448700 acaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcaca 13448758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 13448464 - 13448553
Alignment:
Q  50 gtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 142  Q
    ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||   ||||||||||||||||| |||||||| || |||||    
T  13448464 gtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 13440301 - 13440390
Alignment:
Q  50 gtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 142  Q
    ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || || |    || |||||||||||||||||||||||||||||    
T  13440301 gtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctccta---atgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 13454939 - 13455024
Alignment:
Q  54 ctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 142  Q
    ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||   |||| ||| ||||||| |||||||| ||||||||    
T  13454939 ctcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 13455154 - 13455230
Alignment:
Q  272 gcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaa 348  Q
    ||||||||| ||||||||||| ||||||||| ||  ||| ||||| ||||| ||||| |||||||| ||| ||||||    
T  13455154 gcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaa 13455230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 3417468 - 3417356
Alignment:
Q  190 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 289  Q
    |||||||||||||||||  ||||||||||||||||||  |  |||||||||| || ||||||||||| | ||||  |  |||||||||||| ||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  290 caacactgagtta 302  Q
    |||||||||||||    
T  3417368 caacactgagtta 3417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 3417605 - 3417516
Alignment:
Q  50 gtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 142  Q
    ||||||||| |||  ||| ||||| |||||||||||||  ||||||||||   ||||||| || |||||||| || |||||||| ||||||||    
T  3417605 gtggctcaatatctgaacctgtggggcccaacccctaacgatcaaaccct---tctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 12641587 - 12641467
Alignment:
Q  22 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 121  Q
    |||||||||| || |||||||||||   |||||| |||||||| |||||||| |||||  ||||||| || ||||| ||||| ||| | | |||||||||    
T  12641587 aatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatttctctc 12641488  T
Q  122 ttcgaatccctttggcaacca 142  Q
    ||||||||| || ||||||||    
T  12641487 ttcgaatcctttaggcaacca 12641467  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 28385571 - 28385684
Alignment:
Q  189 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 288  Q
    ||||||||||||||||||  |||||| ||||||||||   | ||||||||||| || ||||||||||| | |||| ||  || ||||||||| |||||||    
T  28385571 ggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgt 28385670  T
Q  289 acaacactgagtta 302  Q
    |||  |||||||||    
T  28385671 acacaactgagtta 28385684  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  53 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 138  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 12540786 - 12540836
Alignment:
Q  50 gtggctcaaaatcataacttgtggagcccaacccctaataatcaaaccctt 100  Q
    ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||    
T  12540786 gtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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