View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_high_7 (Length: 314)
Name: NF10021_high_7
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 40891907 - 40891624
Alignment:
| Q |
14 |
tgcgatatacaggggaaaaattgagaaatcttccacattgtttttcccacagaattcattataagaaaattgtttgtggcacgacaccaatacaagcacg |
113 |
Q |
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| T |
40891907 |
tgcgatatacaggggaaaaattgagaaatcttccacattgtttttcccacagaattcattataagaaaattgtttgtggcacgacaacaatacaagcacg |
40891808 |
T |
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| Q |
114 |
aaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctct-ctcccccatgaattgtatgctatccattgatttcaacg |
212 |
Q |
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| T |
40891807 |
aaaacgcacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctccccccccatgtattgtatgctatccgttgatttcaacg |
40891708 |
T |
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| Q |
213 |
tcgtgtgttgtcgtgggttattgagtcctgctagctagcattgctcttcatataaacccttttcgagttgtatgggttgagtat |
296 |
Q |
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| T |
40891707 |
tcgtttgttgtcgtgggttattgaatcctgctagctaacattgctcttcatataaaccctcttcgagttgtatgggttgagtat |
40891624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 3450073 - 3450207
Alignment:
| Q |
90 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattg |
189 |
Q |
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| T |
3450073 |
tggcacgacaccaatacaaacacgaaaacgcacgacactaatataacccttggatgaataatgtgcagcattgcttttattctctctcccccatgtagtg |
3450172 |
T |
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| Q |
190 |
tatgctatccattgatttcaacgtcgtgtgttgtc |
224 |
Q |
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| T |
3450173 |
tatgctatccgttgattccaacgtcgtgtgttgtc |
3450207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 34254388 - 34254516
Alignment:
| Q |
90 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttat-tctctctcccccatgaatt |
188 |
Q |
| |
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|||||||||||||| |||||| ||| |||||||||| ||||| |||||||||||| |||||||| |||||||||| | |||||||||||| || ||| |
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| T |
34254388 |
tggcacgacaccaacacaagcctgaatacacacgacaatgatatagcccttggatgaaaaatgtgcagcattgcttttttctctctctcccccgtgtatt |
34254487 |
T |
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| Q |
189 |
gtatgctatccattgatttcaacgtcgtg |
217 |
Q |
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| T |
34254488 |
gtatcctacccgttgattccaacgtcgtg |
34254516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 260
Target Start/End: Original strand, 26715224 - 26715392
Alignment:
| Q |
93 |
cacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcc-cccatgaattgta |
191 |
Q |
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|||||||| | |||| |||||| ||| |||||||| ||||||||||||| | || |||||| || || ||| ||||||||||| |||||| |||||| |
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| T |
26715224 |
cacgacacaattacatgcacgagaacgcacgacacacgcataacccttggataatga-tgtgcagcactgttttaattctctctcctcccatgtattgta |
26715322 |
T |
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| Q |
192 |
tgctatccattgatttcaacgtcgtgtgttgtcgtgggtta-ttgagtcctgctagctagcattgctctt |
260 |
Q |
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||| || | | |||| || |||||||||||||||||| | ||||||| ||||| ||||| ||||||| |
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| T |
26715323 |
tgccattcgtcgattcgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgctctt |
26715392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 10505507 - 10505648
Alignment:
| Q |
90 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattg |
189 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||| ||||||||||| ||||||| |||||||||||| | |||| ||| |||| |
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| T |
10505507 |
tggcacgacaccaatacaaacacgaaatg---cgacattgatataatccttggatgaataatgtgcggcattgcttttatcc-----ccccaatgtattg |
10505598 |
T |
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| Q |
190 |
tatgctatccattgatttcaacgtcgtgtgttgtcgtgggttattgagtc |
239 |
Q |
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||||||||||||||||| |||| | |||||||||||| ||| |||||||| |
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| T |
10505599 |
tatgctatccattgattccaacatggtgtgttgtcgttggtcattgagtc |
10505648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 633924 - 633816
Alignment:
| Q |
90 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataaccc-ttggatgaagaatgtgcaacattgcttttattctctctcccccatgaatt |
188 |
Q |
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|||||||||| |||| ||||||||||||| |||||||||| | ||||| ||||||||| ||||| ||| ||| |||||||||||||||||| | ||| |
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| T |
633924 |
tggcacgacatcaat-caagcacgaaaacgcacgacaccagttaaacccattggatgaataatgtacaagattttttttattctctctcccccgtatatt |
633826 |
T |
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| Q |
189 |
gtatgctatc |
198 |
Q |
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||||| |||| |
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| T |
633825 |
gtatgatatc |
633816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 39606501 - 39606414
Alignment:
| Q |
142 |
gatgaagaatgtgcaacattgcttttattctctctcccccatgaattgtatgctatccattgatttcaacgtcgtgtgttgtcgtgggt |
230 |
Q |
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| T |
39606501 |
gatgaataatgtgcagcattgcttttattttctc-cccccatgtattgtatgctagccgtcgatttcgaaattgtgtgttgtcatgggt |
39606414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 258
Target Start/End: Complemental strand, 9522378 - 9522212
Alignment:
| Q |
93 |
cacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcc-cccatgaattgta |
191 |
Q |
| |
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|||||||| | |||| |||||| ||| |||||||| |||| |||||||| | || |||||| || |||||| ||||||||||| |||||| |||||| |
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| T |
9522378 |
cacgacacaattacatgcacgagaacgcacgacacgcgcataaaccttggattatga-tgtgcagcactgctttaattctctctcctcccatgtattgta |
9522280 |
T |
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| Q |
192 |
tgctatccattgatttcaacgtcgtgtgttgtcgtgggtta-ttgagtcctgctagctagcattgctc |
258 |
Q |
| |
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||| |||| ||||| || |||||||||||||||||| | ||||||| ||||| ||||| ||||| |
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| T |
9522279 |
tgccatccgacgatttgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgctc |
9522212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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