View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_low_1 (Length: 724)
Name: NF10021_low_1
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_1 |
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| [»] scaffold2072 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 347 - 707
Target Start/End: Original strand, 13179827 - 13180184
Alignment:
| Q |
347 |
gatatattgatgctatatggacaatttagacatcacaaacaattttattaagtccgagtctgttataatttgtgacttttgatacttgctaggaacctca |
446 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13179827 |
gatatattgatgctat--ggacaatttagacatcacaaacaattttattatgtccaagtctgttataatttgtgacttttgatacttgctaggaacctca |
13179924 |
T |
|
| Q |
447 |
aaatcacgtagaaaaccaatgactctt-caatggtgaaacttttgtatctttggagtcaacaagtgagggcaagggagaagaggaaagaaatatgaaagg |
545 |
Q |
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| T |
13179925 |
a--tcacgtagaaaaccaatgactctttcaatggtgaaacttttgtatctttggagtctacaagtgagggaaagggagaagaggaaagaaatatgaaagg |
13180022 |
T |
|
| Q |
546 |
taaatgctagtttcttcttttgtaacttgtttttgctttgggttttggatcttatagatgttgaaagtcttgggacgtgtgcctattatgaggtgttcta |
645 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||| |
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| T |
13180023 |
taaatgctagtttctacttttgtaacttgtttttgctttgggttttggatcttatagatgttgaaggtcttggaatgtatgcctattatgaggtgttcta |
13180122 |
T |
|
| Q |
646 |
tttcgtttgaagnnnnnnnattgacttggattatgatcatcttatttatattatgacatttg |
707 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13180123 |
tttcgtttgaagtttttttattcacttggattatgatcatcttatttatattatgacatttg |
13180184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 13179764 - 13179833
Alignment:
| Q |
12 |
gaggaattattatattgactttagttcctctagttgagtcacattaaatcttgaacttgattagttatat |
81 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
13179764 |
gaggaattattatattgactttagttcttctagttgagtcacattaaatcttgaagttgattagatatat |
13179833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 297 - 648
Target Start/End: Complemental strand, 44904497 - 44904153
Alignment:
| Q |
297 |
ttagttatttattttccaacaatcccaatcatgtttgattttcatttgatgatatattgatgctatatggacaatttagacatcacaaacaattttatta |
396 |
Q |
| |
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||||||||||||||| ||| ||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
44904497 |
ttagttatttatttttcaa--atctcaatcatgtatgattttcatttgat---atgttgatgctat--ggacaatttagacatcagaaacaattttatta |
44904405 |
T |
|
| Q |
397 |
agtccgagtctgttataatttgtgacttttgatacttgctaggaacctcaaaatcacgtagaaaaccaatgactctt-caatggtgaaacttttgtatct |
495 |
Q |
| |
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|| ||||| |||| | ||| | | ||||| ||||||||||| ||||||| |||| |||||||| |||||||||| ||||| ||||||||||| |||| |
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| T |
44904404 |
cgttggagtcagttaaatttttttagttttggtacttgctaggcacctcaa--tcacttagaaaactaatgactcttacaatgatgaaacttttggatct |
44904307 |
T |
|
| Q |
496 |
ttggagtcaacaagtgagggcaagggagaagaggaaagaaatatgaaaggtaaatgctagtttcttctttt-gtaacttgtttttgctttgggttttgga |
594 |
Q |
| |
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||||| || || |||||||||| |||||||||||||||||| | | ||||| ||| || ||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
44904306 |
ttggaatctacgagtgagggcaggggagaagaggaaagaaagacaacaggtacatgttattttctacttttggtaacttgttttttatttgggttttgga |
44904207 |
T |
|
| Q |
595 |
tcttatagatgttgaaagtcttgggacgtgtgcctattatgaggtgttctattt |
648 |
Q |
| |
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|| |||| |||||||| || |||||| | || ||||||||||||||| ||||| |
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| T |
44904206 |
tcctataaatgttgaaggtattgggatggatgactattatgaggtgttatattt |
44904153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 286 - 648
Target Start/End: Complemental strand, 49092366 - 49092012
Alignment:
| Q |
286 |
ctcacttattt-ttagttatttattttccaacaatcccaatcatgtttgattttcatttgatgatatattgatgctatatggacaatttagacatcacaa |
384 |
Q |
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||||||||||| ||||||||||||||| ||| ||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| || |
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| T |
49092366 |
ctcacttatttgttagttatttatttttcaa--atctcaatcatgtatgattttcatttgat---atgttgatgctat--ggacaatttagacatcagaa |
49092274 |
T |
|
| Q |
385 |
acaattttattaagtccgagtctgttataatttgtgacttttgatacttgctaggaacctcaaaatcacgtagaaaaccaatgactctt-caatggtgaa |
483 |
Q |
| |
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||||||||||| || ||||| ||||||||| | | ||||| || |||||||| ||||||| ||||||||| ||| |||||||||| |||||||||| |
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| T |
49092273 |
gcaattttattatgttggagtcaattataattttttagttttggtatttgctaggcacctcaa--tcacgtagacaactaatgactcttacaatggtgaa |
49092176 |
T |
|
| Q |
484 |
acttttgtatctttggagtcaacaagtgagggcaagggagaagaggaaagaaatatgaaaggtaaatgctagtttcttcttttgtaacttgtttttgctt |
583 |
Q |
| |
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||||||| ||||||||| || ||||||||||||| |||||||||||||||||| |||| ||||| ||| || ||||| |||||| |||| ||||| || |
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| T |
49092175 |
acttttggatctttggaatctacaagtgagggcaggggagaagaggaaagaaagatgacaggtacatgttattttctacttttggtactt-ttttttatt |
49092077 |
T |
|
| Q |
584 |
tgggttttggatcttatagatgttgaaagtcttgggacgtgtgcctattatgaggtgttctattt |
648 |
Q |
| |
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||||||||||||| |||| |||||||| || | | || | || ||||||||||||||| ||||| |
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| T |
49092076 |
tgggttttggatcctataaatgttgaaggtatcgagatggatgactattatgaggtgttatattt |
49092012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 49092581 - 49092423
Alignment:
| Q |
12 |
gaggaattattatattgactttagttcctctagttgagtcacattaaatcttgaacttgattagttatatgtatcaccttccaaattgtggtgtcaatat |
111 |
Q |
| |
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|||||||||||||||||||| |||||| ||||| ||||| | ||||||||||| | ||||||||||||||| ||||||||| |||||||| |||||| |
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| T |
49092581 |
gaggaattattatattgactctagttcttctagctgagttatattaaatcttggagttgattagttatatgaatcaccttctaaattgtgttgtcaa--- |
49092485 |
T |
|
| Q |
112 |
ttaggattctaggtagtggcactttcccgtttaattgtttggagtcaaaatattatatatga |
173 |
Q |
| |
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||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
49092484 |
ttaggatcctaggtagtggcactttccagtttggttgtttggagtcaaaatattatatatga |
49092423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 1424136 - 1424026
Alignment:
| Q |
154 |
agtcaaaatattatatatgactagtatcatc---attgatattttatattgtatgatcctacgcatgatggacttctcgaagtgtatcttttccaagaca |
250 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | ||||||||||| ||||| ||||||| ||||||||||||||| ||||| ||| ||||| ||||| |
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| T |
1424136 |
agtcaaaatattatatatgactaatatgatcggcactgatattttatgttgtaagatcctatgcatgatggacttctgcaagtggatcctttccgagaca |
1424037 |
T |
|
| Q |
251 |
ctctgggtatc |
261 |
Q |
| |
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||||||||| |
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| T |
1424036 |
agctgggtatc |
1424026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 17393757 - 17393634
Alignment:
| Q |
13 |
aggaattattatattgactttagttcctctagttgagtcacattaaatcttgaacttgattagttatatgtatcaccttccaaattgtggtgtcaatatt |
112 |
Q |
| |
|
||||| ||||||||||||| |||||| ||| | ||||| ||||||||||||||| || |||||||||||| ||| |||||| ||||||| |||||| | |
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| T |
17393757 |
aggaagtattatattgactctagttcttctggatgagttacattaaatcttgaagtttattagttatatgaatcgccttccgaattgtgttgtcaa---t |
17393661 |
T |
|
| Q |
113 |
taggattctaggtagtggcactttccc |
139 |
Q |
| |
|
|||||| |||||||||||||||||||| |
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|
| T |
17393660 |
taggatcctaggtagtggcactttccc |
17393634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2072 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold2072
Description:
Target: scaffold2072; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 82 - 2
Alignment:
| Q |
12 |
gaggaattattatattgactttagttcctctagttgagtcacattaaatcttgaacttgattagttatatgtatcaccttc |
92 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||||| | ||||||||||| | ||||||||||||||| ||||||||| |
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|
| T |
82 |
gaggaattattatattgactctagttcttctagctgagttatattaaatcttggagttgattagttatatgaatcaccttc |
2 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 536
Target Start/End: Original strand, 29847867 - 29848015
Alignment:
| Q |
387 |
aattttattaagtccgagtctgttataatttgtgacttttgatacttgctaggaacctcaaaatcacgtaga-aaaccaatgactctt-caatggtgaaa |
484 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| |||||||| ||| ||||| |||||| || |||||| |||| |||||||||| ||||| ||||| |
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| T |
29847867 |
aattttattaacttcaagtctgttataatc-gtggcttttgattctttctaggcacctcac--tcgcgtagagaaactaatgactctttcaatgatgaaa |
29847963 |
T |
|
| Q |
485 |
cttttgtatctttggagtcaacaagtgagggcaagggagaagaggaaagaaa |
536 |
Q |
| |
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|||||| |||||||||| |||| |||| || || ||||||||||||||| |
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| T |
29847964 |
cttttggttctttggagtgtacaaacgaggacagggcagaagaggaaagaaa |
29848015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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