View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10021_low_17 (Length: 277)
Name: NF10021_low_17
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 35095744 - 35096009
Alignment:
| Q |
1 |
tctggcatgagatggaatgtcattcatcgagagaaaagagttgatagacaacccaatatatgctaaactatcggcaccacaatttccttctctaaatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35095744 |
tctggcatgagatggaatgtcattcatcgagagaaaagagttgatagacaacccaatatatgctaaactatcggcaccacaatttccttctctaaatata |
35095843 |
T |
|
| Q |
101 |
cgagagactatgaagttcatttgttttgttaaatcaatgcaattttcccatctattccttatgttttatggaacaaaggacgaagacttaacagaaccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35095844 |
cgagagactatgaagttcatttgttttgttaaatcaatgcaattttcccatctattccttatgttttatggaacaaaggacgaaggcttaacagaaccaa |
35095943 |
T |
|
| Q |
201 |
tgtcgaatcagtttctaaccatagattagtccagcctttgttgtaagctatctcaattgcattcat |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35095944 |
tgtcgaatcagtttctaaccatagattagtccagcctttattgtaagctatctcaattgcattcat |
35096009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University