View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_low_20 (Length: 241)
Name: NF10021_low_20
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42742718 - 42742496
Alignment:
| Q |
1 |
ttcaatccttaaggttgcgataattattaatcaatctttaagcaatattattaaaaacattgtaggtgaccatgtaattgtaaattttattttttatttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42742718 |
ttcaatccttaaggttgcgataattattaatcaatctttaagcaatattataaaaaaaattgtaggtgaccatgtaattgtaaattttattttctatttc |
42742619 |
T |
|
| Q |
101 |
agcctgacatcactgcaccaggaatcaaaataattgcagcttatagtgaagctgtacctccttcaccaagtgaatctgataagcgaagaactccttttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42742618 |
agcctgacatcactgcaccaggaatcaaaataattgcagcttatagcgaagctatacctccttcaccaagtgaatctgataagcgaagaactcattttaa |
42742519 |
T |
|
| Q |
201 |
tattatgtcaggcacttcgatgg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
42742518 |
tattatgtcaggcacttcgatgg |
42742496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42752077 - 42751855
Alignment:
| Q |
1 |
ttcaatccttaaggttgcgataattattaatcaatctttaagcaatattattaaaaacattgtaggtgaccatgtaattgtaaattttattttttatttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42752077 |
ttcaatccttaaggttgcgataattattaatcaatctttaagcaatattataaaaaaaattgtaggtgaccatgtaattgtaaattttattttctatttc |
42751978 |
T |
|
| Q |
101 |
agcctgacatcactgcaccaggaatcaaaataattgcagcttatagtgaagctgtacctccttcaccaagtgaatctgataagcgaagaactccttttaa |
200 |
Q |
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| T |
42751977 |
agcctgacatcactgcaccaggaatcaaaataattgcagcttatagcgaagctatacctccttcaccaagtgaatctgataagcgaagaactcattttaa |
42751878 |
T |
|
| Q |
201 |
tattatgtcaggcacttcgatgg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
42751877 |
tattatgtcaggcacttcgatgg |
42751855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42761537 - 42761318
Alignment:
| Q |
1 |
ttcaatccttaaggttgcgataattattaatcaatctttaagcaatattattaaaaacattgtaggtgaccatgtaattgtaaattttattttttatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||| |||||| |||| | |||||||| |||||| |
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| T |
42761537 |
ttcaatccttaaggttgcgataattattaatcaatctttaaacaatatgataaaaaat-ttgtaggtgac-atgtaactgtataatttattttctatttc |
42761440 |
T |
|
| Q |
101 |
agcctgacatcactgcaccaggaatcaaaataattgcagcttatagtgaagctgtacctccttcaccaagtgaatctgataagcgaagaactccttttaa |
200 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||| || || | || ||||||||||||||||||||||| |
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| T |
42761439 |
agcctgacatcactgcaccaggagtcaacataattgcagcttatagtgaagctatatctcctacagaaaattcatatgataagcgaagaactccttttat |
42761340 |
T |
|
| Q |
201 |
tattatgtcaggcacttcgatg |
222 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
42761339 |
tactatgtcaggcacttcgatg |
42761318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 42736069 - 42736198
Alignment:
| Q |
89 |
attttttatttcagcctgacatcactgcaccaggaatcaaaataattgcagcttatagtgaagctgtacctccttcaccaagtgaatctgataagcgaag |
188 |
Q |
| |
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||||| |||||||||||||||| || ||||||||| |||| ||||||||||||||||||||| || | ||||||||| ||||| ||| |||||||| | |
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|
| T |
42736069 |
attttctatttcagcctgacattacagcaccaggagtcaacataattgcagcttatagtgaatctacatctccttcacaaagtgcatccgataagcgcat |
42736168 |
T |
|
| Q |
189 |
aactccttttaatattatgtcaggcacttc |
218 |
Q |
| |
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|| |||||||| | ||||||||||||||| |
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| T |
42736169 |
aattccttttatgactatgtcaggcacttc |
42736198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 42715804 - 42715755
Alignment:
| Q |
101 |
agcctgacatcactgcaccaggaatcaaaataattgcagcttatagtgaa |
150 |
Q |
| |
|
||||||||||||| ||||||||| || | |||||||| |||||||||||| |
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|
| T |
42715804 |
agcctgacatcaccgcaccaggagtcgacataattgctgcttatagtgaa |
42715755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23041686 - 23041912
Alignment:
| Q |
1 |
ttcaatccttaaggttgcgata-at---tattaatcaatctttaagcaatattattaaaaacattgtaggtgaccatgtaattgtaaattttatttttta |
96 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |
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| T |
23041686 |
ttcaatccttaaggttacgatagatagatattaatcaatctttaagcaatattataaaaataattgtaggtgaccatgtaattgtaaattttattttcta |
23041785 |
T |
|
| Q |
97 |
tttcagcctgacatcactgcaccaggaatcaaaataattgcagcttatagtgaagctgtacctccttcaccaagtgaatctgataagcgaagaactcctt |
196 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23041786 |
tttcagcctgacatcactgcaccaggagtcaaaataattgcagcttatagtgaagctttacctcgttcaccaagtgaatctgataagcgaagaactcctt |
23041885 |
T |
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| Q |
197 |
ttaatattatgtcaggcacttcgatgg |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23041886 |
ttaatattatgtcaggcacttcgatgg |
23041912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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