View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_low_22 (Length: 237)
Name: NF10021_low_22
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 54793532 - 54793731
Alignment:
| Q |
22 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgt |
121 |
Q |
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| T |
54793532 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgt |
54793631 |
T |
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| Q |
122 |
gcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaaaaattcagcatgg |
221 |
Q |
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| T |
54793632 |
gcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaaaaattcagcatgg |
54793731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 52286224 - 52286408
Alignment:
| Q |
33 |
ttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgtgcaagtctgca |
132 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||||||| |
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| T |
52286224 |
ttttaggggttaaatgaaatgctgactggtaataataaaactaatattgggacgaaaagaatgggagaccttgatcagaaagtttttgtgaatgtctgca |
52286323 |
T |
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| Q |
133 |
agaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaaaaattcagc |
217 |
Q |
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| T |
52286324 |
agaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctctttttggcaggagaatgtgaagaattcagc |
52286408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 54776049 - 54775950
Alignment:
| Q |
22 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgt |
121 |
Q |
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| T |
54776049 |
aatttctattgttttaggggttaaatgaaatggtgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgt |
54775950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 801382 - 801571
Alignment:
| Q |
22 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| || || || |||||||||||||| ||||||||||||| |
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| T |
801382 |
aatttctattgttttaggggttaaatgaaatgctgactggtgccaa---aactaatattggcaccaagaggatgggagaccttgaccagaaggtttttgt |
801478 |
T |
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| Q |
122 |
gcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaaaaattcagc |
217 |
Q |
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| T |
801479 |
gaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttatggcaggaaaatgtgaagaactcagc |
801571 |
T |
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