View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10021_low_4 (Length: 515)

Name: NF10021_low_4
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10021_low_4
NF10021_low_4
[»] chr1 (9 HSPs)
chr1 (164-457)||(8376168-8376459)
chr1 (467-515)||(8376502-8376550)
chr1 (307-354)||(4489353-4489400)
chr1 (393-442)||(12188699-12188748)
chr1 (404-446)||(3895623-3895665)
chr1 (393-442)||(2193268-2193317)
chr1 (327-382)||(5955059-5955111)
chr1 (393-441)||(29020152-29020200)
chr1 (402-442)||(42724007-42724047)
[»] chr4 (11 HSPs)
chr4 (394-446)||(48582241-48582293)
chr4 (321-442)||(11086266-11086386)
chr4 (321-442)||(54335154-54335270)
chr4 (393-442)||(37626782-37626831)
chr4 (321-355)||(53654292-53654326)
chr4 (321-362)||(6086035-6086076)
chr4 (401-442)||(37858277-37858318)
chr4 (393-441)||(21865253-21865301)
chr4 (393-441)||(21921114-21921162)
chr4 (307-355)||(37626701-37626749)
chr4 (394-442)||(41260003-41260051)
[»] chr2 (6 HSPs)
chr2 (393-443)||(168728-168778)
chr2 (393-453)||(31598026-31598086)
chr2 (307-441)||(8033273-8033400)
chr2 (321-361)||(14845950-14845990)
chr2 (321-442)||(31915045-31915161)
chr2 (401-442)||(38373335-38373376)
[»] chr6 (1 HSPs)
chr6 (307-382)||(29694288-29694360)
[»] chr8 (6 HSPs)
chr8 (393-441)||(27982375-27982423)
chr8 (393-441)||(28039677-28039725)
chr8 (313-346)||(13636230-13636263)
chr8 (313-346)||(13736643-13736676)
chr8 (393-430)||(44167177-44167214)
chr8 (401-453)||(22488874-22488926)
[»] chr7 (4 HSPs)
chr7 (393-453)||(23070208-23070268)
chr7 (318-362)||(23865869-23865913)
chr7 (393-442)||(11907285-11907334)
chr7 (307-355)||(2256504-2256552)
[»] chr3 (3 HSPs)
chr3 (321-361)||(4195406-4195446)
chr3 (393-442)||(42005413-42005462)
chr3 (307-355)||(54153853-54153901)
[»] chr5 (3 HSPs)
chr5 (313-344)||(7612030-7612061)
chr5 (307-362)||(25731201-25731256)
chr5 (393-442)||(30251953-30252002)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 164 - 457
Target Start/End: Original strand, 8376168 - 8376459
Alignment:
Q  164 taataataattctaatttataattacactaaaatcctatcctattttgctccaacaaaaaatcctatcatattgcctaacaagcacaaccaatcaaacaa 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8376168 taataataattctaatttataattacactaaaatcctatcctattttgctccaaaaaaaaatcctatcatattgcctaacaagcacaaccaatcaaacaa 8376267  T
Q  264 taatttttagtgtaacatgcaattaacacacgaagaatactgacattgccctttgaacattggttaaagtattaaaataagtaggtttgcataaaaaaga 363  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |    
T  8376268 taatttttagtgtaacatgcaattaatacacggagaagactgacattgccctttggatattggttaaagtattaaaataagtaagtttgcataaaaaaaa 8376367  T
Q  364 agtggtgtaattattgttagnnnnnnnnngtaaagatttgtatttctaagataaagtttctattaatgaaatccttaacaattatccttatagc 457  Q
    | ||||||||||||||||||         ||||| | || |||||| || ||||| |||||||||||||||| |||||||||| ||||||||||    
T  8376368 aatggtgtaattattgttag--aaaaaaagtaaaaacttatatttccaaaataaaatttctattaatgaaattcttaacaattgtccttatagc 8376459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 8376502 - 8376550
Alignment:
Q  467 ttttccccttcaaaaataatgtgatatcacaaattacaaccatctcctc 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8376502 ttttccccttcaaaaataatgtgatatcacaaattacaaccatctcctc 8376550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 4489400 - 4489353
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgca 354  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||    
T  4489400 cattgcctttggaacattggttaaagtattaaaataagtaagtttgca 4489353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 12188699 - 12188748
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||| ||||||||||| |||| |||||||||||||||| ||||||||||    
T  12188699 gtaaaaatttgtatttccaagacaaagtttctattaatggaatccttaac 12188748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 3895623 - 3895665
Alignment:
Q  404 tatttctaagataaagtttctattaatgaaatccttaacaatt 446  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  3895623 tatttttaagataaaatttctattaatgaaattcttaacaatt 3895665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 2193317 - 2193268
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    |||||||||| |||||  ||||||||||||||||||||  ||||||||||    
T  2193317 gtaaagatttatattttcaagataaagtttctattaatagaatccttaac 2193268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 5955111 - 5955059
Alignment:
Q  327 ttaaagtattaaaataagtaggtttgcataaaaaagaagtggtgtaattattgtta 382  Q
    |||||||||||||||||||| |||| |||||||   |||| |||||||||||||||    
T  5955111 ttaaagtattaaaataagtaagtttacataaaa---aagttgtgtaattattgtta 5955059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 29020152 - 29020200
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaa 441  Q
    ||||| |||||||||||||||| ||| |||||| ||||||| |||||||    
T  29020152 gtaaaaatttgtatttctaagacaaaatttctactaatgaattccttaa 29020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 42724007 - 42724047
Alignment:
Q  402 tgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  42724007 tgtatttcaaagacaaagtttctattaatggaatccttaac 42724047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 48582241 - 48582293
Alignment:
Q  394 taaagatttgtatttctaagataaagtttctattaatgaaatccttaacaatt 446  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  48582241 taaagatttgtattttcaagataaagtttctattaatgaaatccttaacaatt 48582293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 11086266 - 11086386
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcataaaaaagaagt-ggtgtaattattgttagnnnnnnnnngtaaagatttgtatttctaagataaag 419  Q
    |||||||||||||||||||||||||| ||||| |||||||| || | ||| ||| ||||| ||          ||||||||||||||||| |||||||||    
T  11086266 cattggttaaagtattaaaataagtaagtttgtataaaaaaaaattaggtataaatattgcta--agaaaaaagtaaagatttgtatttccaagataaag 11086363  T
Q  420 tttctattaatgaaatccttaac 442  Q
    || ||||||||||||||||||||    
T  11086364 ttcctattaatgaaatccttaac 11086386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 442
Target Start/End: Complemental strand, 54335270 - 54335154
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcataaaaaagaagtggtgtaattattgttagnnnnnnnnngtaaagatttgtatttctaagataaagt 420  Q
    |||||||||||||| ||||||||||| |||||||||||||  |||||||| ||||||||  ||         ||||||| ||||||||| |||||||| |    
T  54335270 cattggttaaagtactaaaataagtaagtttgcataaaaa--aagtggtgcaattattgcaag---aaacaagtaaagacttgtatttccaagataaaat 54335176  T
Q  421 ttctattaatgaaatccttaac 442  Q
    |||||||| ||||||| |||||    
T  54335175 ttctattagtgaaatctttaac 54335154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 37626782 - 37626831
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||||| ||||||||| |||| ||||||| |||||||||||||||||||    
T  37626782 gtaaagacttgtatttccaagacaaagtttatattaatgaaatccttaac 37626831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 355
Target Start/End: Original strand, 53654292 - 53654326
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcat 355  Q
    |||||||||||||||||||||||||| ||||||||    
T  53654292 cattggttaaagtattaaaataagtatgtttgcat 53654326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 6086076 - 6086035
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcataaaaaag 362  Q
    ||||||||||||||||||| |||||| |||||| ||||||||    
T  6086076 cattggttaaagtattaaagtaagtaagtttgcgtaaaaaag 6086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Original strand, 37858277 - 37858318
Alignment:
Q  401 ttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||||||  |||||||||||||||||||| |||||||||||    
T  37858277 ttgtattttcaagataaagtttctattaatcaaatccttaac 37858318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 21865253 - 21865301
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaa 441  Q
    ||||| ||||||||||| |||||||| || ||||||||| |||||||||    
T  21865253 gtaaaaatttgtatttccaagataaaattactattaatggaatccttaa 21865301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 21921114 - 21921162
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaa 441  Q
    ||||| ||||||||||| |||||||| || ||||||||| |||||||||    
T  21921114 gtaaaaatttgtatttccaagataaaattactattaatggaatccttaa 21921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 37626701 - 37626749
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgcat 355  Q
    |||||||||| |  |||||||||||||| ||||||||||| ||||||||    
T  37626701 cattgcccttggggcattggttaaagtactaaaataagtaagtttgcat 37626749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 41260051 - 41260003
Alignment:
Q  394 taaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    |||||| ||||||||  |||| |||||||||||||||| ||||||||||    
T  41260051 taaagacttgtattttcaagacaaagtttctattaatggaatccttaac 41260003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 168728 - 168778
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaaca 443  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  168728 gtaaagatttgtatttctaagataaaatttctattaatggaatccttaaca 168778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 31598086 - 31598026
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaacaattatcctta 453  Q
    ||||||||||| ||||| |||| |||||||||||||||| |||||||||| ||| ||||||    
T  31598086 gtaaagatttgaatttccaagacaaagtttctattaatggaatccttaactattgtcctta 31598026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 441
Target Start/End: Complemental strand, 8033400 - 8033273
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgcataaaaaagaagtggtgtaattattgttagnnnnnnnnngtaaagatttgtat 406  Q
    |||||||||| |  ||||||||||||||||||||||||||  |||||||  |||||   |||||||||||||| ||          ||||| | ||||||    
T  8033400 cattgcccttggggcattggttaaagtattaaaataagtaaatttgcatcgaaaag---tggtgtaattattgata---aaaaaaagtaaa-acttgtat 8033308  T
Q  407 ttctaagataaagtttctattaatgaaatccttaa 441  Q
    ||  |||||||||||||||||||||||||||||||    
T  8033307 tttcaagataaagtttctattaatgaaatccttaa 8033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 14845990 - 14845950
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcataaaaaa 361  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  14845990 cattggttaaagtattaaaataagtaagtttacataaaaaa 14845950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 442
Target Start/End: Complemental strand, 31915161 - 31915045
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcataaaaaagaagtggtgtaattattgttagnnnnnnnnngtaaagatttgtatttctaagataaagt 420  Q
    |||||||||||||||||||||||||| ||||||||  ||   ||||||||||||||||  ||          ||||||| ||||||||  |||| |||||    
T  31915161 cattggttaaagtattaaaataagtaagtttgcatcgaa---aagtggtgtaattatttcta--tgaaaaaagtaaagacttgtattttcaagacaaagt 31915067  T
Q  421 ttctattaatgaaatccttaac 442  Q
    ||||||||||| ||||||||||    
T  31915066 ttctattaatggaatccttaac 31915045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 38373376 - 38373335
Alignment:
Q  401 ttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||||||| ||||||||||||||||||||| |||| |||||    
T  38373376 ttgtatttccaagataaagtttctattaatggaatcattaac 38373335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 29694288 - 29694360
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgcataaaaaagaagtggtgtaattattgtta 382  Q
    |||||||||| | ||||||||||||||| ||||||||||| ||||||||  ||   ||||| ||||||||||||||    
T  29694288 cattgcccttaggacattggttaaagtactaaaataagtaagtttgcattgaa---aagtgatgtaattattgtta 29694360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 27982375 - 27982423
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaa 441  Q
    ||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  27982375 gtaaagacttgtatttccaagacaaagtttctattaatggaatccttaa 27982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 28039677 - 28039725
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaa 441  Q
    ||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  28039677 gtaaagacttgtatttccaagacaaagtttctattaatggaatccttaa 28039725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 13636230 - 13636263
Alignment:
Q  313 cctttgaacattggttaaagtattaaaataagta 346  Q
    ||||||||||||| ||||||||||||||||||||    
T  13636230 cctttgaacattgattaaagtattaaaataagta 13636263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 13736643 - 13736676
Alignment:
Q  313 cctttgaacattggttaaagtattaaaataagta 346  Q
    ||||||||||||| ||||||||||||||||||||    
T  13736643 cctttgaacattgattaaagtattaaaataagta 13736676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 44167214 - 44167177
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaat 430  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  44167214 gtaaagatttgtatttccaagacaaagtttctattaat 44167177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 22488874 - 22488926
Alignment:
Q  401 ttgtatttctaagataaagtttctattaatgaaatccttaacaattatcctta 453  Q
    ||||||||| || | |||||||||||||||| |||||||||| |||| |||||    
T  22488874 ttgtatttccaaaacaaagtttctattaatggaatccttaaccattaccctta 22488926  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 23070268 - 23070208
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaacaattatcctta 453  Q
    ||||||| ||||||||| |||| |||||||||||||||| ||| |||||| ||| ||||||    
T  23070268 gtaaagacttgtatttccaagacaaagtttctattaatggaattcttaaccattgtcctta 23070208  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 23865913 - 23865869
Alignment:
Q  318 gaacattggttaaagtattaaaataagtaggtttgcataaaaaag 362  Q
    |||||||  |||||||| |||||||||||||||||||||||||||    
T  23865913 gaacatttattaaagtactaaaataagtaggtttgcataaaaaag 23865869  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 11907334 - 11907285
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||||| |||||||||||| | ||| |||||||||||| ||||||||||    
T  11907334 gtaaagacttgtatttctaaaacaaattttctattaatggaatccttaac 11907285  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 2256552 - 2256504
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgcat 355  Q
    |||||| ||| ||| ||||||| ||||||||||||||||| ||||||||    
T  2256552 cattgctcttggaatattggttgaagtattaaaataagtaagtttgcat 2256504  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 4195446 - 4195406
Alignment:
Q  321 cattggttaaagtattaaaataagtaggtttgcataaaaaa 361  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  4195446 cattggttaaagtactaaaataagtaagtttgcataaaaaa 4195406  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 42005413 - 42005462
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||||||||||||||  || ||||| |||||||||||| ||||||||||    
T  42005413 gtaaagatttgtattttcaatataaaatttctattaatggaatccttaac 42005462  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 54153853 - 54153901
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgcat 355  Q
    |||||||||| |  |||||||||||||| ||||||||||| ||||||||    
T  54153853 cattgcccttggggcattggttaaagtactaaaataagtaagtttgcat 54153901  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 344
Target Start/End: Complemental strand, 7612061 - 7612030
Alignment:
Q  313 cctttgaacattggttaaagtattaaaataag 344  Q
    ||||||||||||||||||||||||||||||||    
T  7612061 cctttgaacattggttaaagtattaaaataag 7612030  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 25731201 - 25731256
Alignment:
Q  307 cattgccctttgaacattggttaaagtattaaaataagtaggtttgcataaaaaag 362  Q
    ||||||| ||||  |||||||||||||| ||||||||||| ||||||||| |||||    
T  25731201 cattgccttttgggcattggttaaagtactaaaataagtaagtttgcatagaaaag 25731256  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 30252002 - 30251953
Alignment:
Q  393 gtaaagatttgtatttctaagataaagtttctattaatgaaatccttaac 442  Q
    ||||||| ||||||||| |||| ||| |||||||||||| ||||||||||    
T  30252002 gtaaagacttgtatttccaagacaaaatttctattaatggaatccttaac 30251953  T

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