View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_low_5 (Length: 485)
Name: NF10021_low_5
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 228 - 470
Target Start/End: Complemental strand, 176725 - 176483
Alignment:
| Q |
228 |
taatgaacatagaaccaacataaaataaattaaataataaacggaaacaccacaggaggagaatctttgagagccagcatagcaaagcaagtaggtcaag |
327 |
Q |
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| T |
176725 |
taatgaacatagaaccaacataaaataaattaaataataaacggaaacaccacaggaggagaatctttgagagccagcagagcaaagcaagtaggtcaag |
176626 |
T |
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| Q |
328 |
gtgatatgagactctcaacatagacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggatt |
427 |
Q |
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| T |
176625 |
gtgatatgagactctcaacatagacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggatt |
176526 |
T |
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| Q |
428 |
ctttactgcaccagtcttgtaattgtaaacatataccttattg |
470 |
Q |
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| T |
176525 |
ctttactgcaccagtcttgtaattgtaaacatataccttattg |
176483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 176988 - 176759
Alignment:
| Q |
9 |
gaaccaaccggggtattatttttgaaaatggagaagaatagcactagtggacaatgaagaaaagtaaaaatcctcaagtgtatcttaattttgatgttaa |
108 |
Q |
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| T |
176988 |
gaaccaaccagggtattatttttgaaaatgtagaagaatagcactagtggacaatgaagaaaagtaaaaatcctcaagtgtatcgtaattttgatgttaa |
176889 |
T |
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| Q |
109 |
catcccaatcaaaaccaatggtactaatgattcatccaactgcgacaacatctgcaattattttcacttcatnnnnnnnntt-----agaacaaaaaaga |
203 |
Q |
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| T |
176888 |
catcccaatcaaaaccaatggtactaatgattcatccaactacgacaacatctgcaattattttcacttcataaaaaagaattagaaagaaaaaaaagga |
176789 |
T |
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| Q |
204 |
ataagcatcgagcaaagatattaataatga |
233 |
Q |
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| T |
176788 |
ataagcatcgagcaaagatattaataatga |
176759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 7564504 - 7564573
Alignment:
| Q |
285 |
ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat |
354 |
Q |
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| T |
7564504 |
ggagaatctctgagatccaacatagcaaagcgtgtaggtcaaggtgatacgagactctcaacatagacat |
7564573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 1459275 - 1459340
Alignment:
| Q |
283 |
gaggagaatctttgagagccagcatagcaaagcaa-----gtaggtcaaggtgatatgagactctc |
343 |
Q |
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| T |
1459275 |
gaggagaatcttcgagagccaacatagcacagcaaataatgtaggtcaaggtgatatgagactctc |
1459340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 1453677 - 1453737
Alignment:
| Q |
405 |
gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatatacct |
465 |
Q |
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| T |
1453677 |
gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacct |
1453737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 1465369 - 1465429
Alignment:
| Q |
405 |
gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatatacct |
465 |
Q |
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| T |
1465369 |
gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacct |
1465429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 370569 - 370604
Alignment:
| Q |
319 |
taggtcaaggtgatatgagactctcaacatagacat |
354 |
Q |
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| T |
370569 |
taggtcaaggtgatatgagactctcaacgtagacat |
370604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 1453587 - 1453656
Alignment:
| Q |
285 |
ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat |
354 |
Q |
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||||||| || ||||| || ||||| ||||||| |||| |||||||| ||||||||||||| ||||||| |
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| T |
1453587 |
ggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacat |
1453656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 1465279 - 1465348
Alignment:
| Q |
285 |
ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat |
354 |
Q |
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||||||| || ||||| || ||||| ||||||| |||| |||||||| ||||||||||||| ||||||| |
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| T |
1465279 |
ggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacat |
1465348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 55420109 - 55420068
Alignment:
| Q |
283 |
gaggagaatctttgagagccagcatagcaaagcaagtaggtc |
324 |
Q |
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| T |
55420109 |
gaggagaatcttcgagagacagcatagcaaagcatgtaggtc |
55420068 |
T |
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