View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10021_low_6 (Length: 477)
Name: NF10021_low_6
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 23786894 - 23786572
Alignment:
| Q |
17 |
actacgatggtccaaaggataaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23786894 |
actacgatggtccaaaggataaccctttttaagtatgatgtcattataaaacggcattgctttgtctatctgacttctaagacaaaaaccttctaagaga |
23786795 |
T |
|
| Q |
117 |
gcatttaaagtttcagcagtaggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacctcttagagagtgacactgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23786794 |
gcatttaaagtttcagcagtaggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacctcttagagagtgacactgga |
23786695 |
T |
|
| Q |
217 |
tgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcaaatttggataattcatcatttaattctttgac-aggttaaaaatagcgtc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| ||| |
|
|
| T |
23786694 |
tgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcgaatttggataattcatcatctaattctttgacaaggataaaaatagtgtc |
23786595 |
T |
|
| Q |
316 |
gaaagagtgcattttagcaagtt |
338 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23786594 |
gaaagagtgcattttagcaagtt |
23786572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 339 - 477
Target Start/End: Complemental strand, 23786540 - 23786402
Alignment:
| Q |
339 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgaggattgccatagtcattagaaaaagcgacacgcggtctagccatggga |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23786540 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgaggattgccatagtcattagaaaaagcgatacgcggtctagccatggga |
23786441 |
T |
|
| Q |
439 |
gttggatataatactgagaaggatgacgaaacaaaacga |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23786440 |
gttggatataatactgagaaggatgacgaaacaaaacga |
23786402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 47568987 - 47568800
Alignment:
| Q |
37 |
aaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagagagcatttaaagtttcagcagt |
136 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| |||||||||||| |||| | ||| |||||||||| |||| ||| ||| ||||||| | ||| |
|
|
| T |
47568987 |
aaccgtttttaagtatgatgtcattgtaaaacagcattgctttgtcagtctgtcgtctgcgacaaaaaccaactaaaagatgattcaaagtttgtgtagt |
47568888 |
T |
|
| Q |
137 |
aggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacctcttagagagtgacactggatgaggata |
224 |
Q |
| |
|
||||| || ||||| ||||||| |||||| |||| || ||| | |||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
47568887 |
aggattatcaccggtgtcgatgattttatggaataaagagatatctgaagacattttaccttgtctagagtgacactggatgaggata |
47568800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 28238926 - 28238753
Alignment:
| Q |
23 |
atggtccaaaggataaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagagagcattt |
122 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||| ||||| |||||| |||| |||||| |||| ||||||||| | ||| |||| || |
|
|
| T |
28238926 |
atggtccaactgaaaaccctttttaagtatgatgtaattgtaaaagtgcattgccttgtgaatctgatgtctatcacaaaaaccatataaaagagaatac |
28238827 |
T |
|
| Q |
123 |
aaagtttcagcagtaggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacc |
196 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| | |||| ||| | ||| |||||||||||||||||| |
|
|
| T |
28238826 |
aaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
28238753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University