View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_low_7 (Length: 455)
Name: NF10021_low_7
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 24723975 - 24724395
Alignment:
| Q |
20 |
tcatgctacctttagacttatcccaaaagacgctgacggtaaaattgtgatgttagaaccatttgatcttcctggaatgactgtaagtcaccaaggacca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24723975 |
tcatgctacctttagacttatcccaaaagacgctgacggtaaaactgtgatgttagaaccatttgatcttcctggaatgactgtaagtcaccaaggacca |
24724074 |
T |
|
| Q |
120 |
gagaaacctcttatcattgtagattcttcccatggtgggccttcttcggtttttcttgtggtaccgggcttggatggacgaaatcaaacaatatctttag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724075 |
gagaaacctcttatcattgtagattcttcccatggcgggccttcttcggtttttcttgtggtaccgggcttggatggacgaaatcaaacaatatctttag |
24724174 |
T |
|
| Q |
220 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724175 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
24724274 |
T |
|
| Q |
320 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
419 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724275 |
agcaaatagttttgtttcagggaaaggattaaggcaatacaatcctatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
24724374 |
T |
|
| Q |
420 |
aacttcagggatgagcactat |
440 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24724375 |
aacttcagggatgagcactat |
24724395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 24732687 - 24733103
Alignment:
| Q |
20 |
tcatgctacctttagacttatcccaaaagacgctgacggtaaaattgtgatgttagaaccatttgatcttcctggaatgactgtaagtcaccaaggacca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24732687 |
tcatgctacctttagacttatcccaaaagacgctgatggtaaaactgtgatgttagaaccatttgatcttcctggaatgactgtaagtcaccaaggaccg |
24732786 |
T |
|
| Q |
120 |
gagaaacctcttatcattgtagattcttcccatggtgggccttcttcggtttttcttgtggtaccgggcttggatggacgaaatcaaacaatatctttag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
24732787 |
gagaaacctcttatcattgtagattcttcccatggggggccttcatcggtttttcttgtggtaccaggattggatggacgaaatcaaacaatatctttag |
24732886 |
T |
|
| Q |
220 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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|
| T |
24732887 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagctaaggtgcaagactgcttctgaagctagttttaacca |
24732986 |
T |
|
| Q |
320 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
419 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||| |
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|
| T |
24732987 |
agcaactagttttgtttccggcaaaggattaaggcaataccatcctatcagctttgttgctaaaggtgcaaaccagaattttcttttagacccattgttc |
24733086 |
T |
|
| Q |
420 |
aacttcagggatgagca |
436 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
24733087 |
aactttagggatgagca |
24733103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 27 - 440
Target Start/End: Original strand, 24693245 - 24693658
Alignment:
| Q |
27 |
acctttagacttatcccaaaagacgctgacggtaaaattgtgatgttagaaccatttgatcttcctggaatgactgtaagtcaccaaggaccagagaaac |
126 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| ||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||| ||| |
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|
| T |
24693245 |
acctttagacttatcctaaaaggcgctgttagtaaaactgtgatgctagaaccaattgatcttcctggaatgattgtaagtcaccaagaaccagaccaac |
24693344 |
T |
|
| Q |
127 |
ctcttatcattgtagattcttcccatggtgggccttcttcggtttttcttgtggtaccgggcttggatggacgaaatcaaacaatatctttagaatcaca |
226 |
Q |
| |
|
||||||| |||||||||| |||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24693345 |
ctcttattgttgtagattcctcccttggcgggccttcttcagtttttcttgtggtaccaggcttggatggacgaaatcaaacaatatctttacaatcaca |
24693444 |
T |
|
| Q |
227 |
aagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaaccaagcaact |
326 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| | |
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|
| T |
24693445 |
aagcaataaagattgttacgtgtatagcgatatgagctctggttcaggagttaagctaaggtgcaagtctgattctgaagctagttttaaccaagcagca |
24693544 |
T |
|
| Q |
327 |
agttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttcaacttca |
426 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||| | |
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| T |
24693545 |
agtttcgtttccgggaaaggattaaggcaataccatcctatcagctttgtggctaaaggaggaaaccagaattttcttttagagccattgttcaacttta |
24693644 |
T |
|
| Q |
427 |
gggatgagcactat |
440 |
Q |
| |
|
||||||| |||||| |
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|
| T |
24693645 |
gggatgaacactat |
24693658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 24747856 - 24748275
Alignment:
| Q |
20 |
tcatgctacctttagacttatcccaaaagacgctgacggtaaaattgtgatgttagaaccatttgatcttcctggaatgactgtaagtcaccaaggacca |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| |
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|
| T |
24747856 |
tcatgctacctttagacttatctcaaaagatattgataataaaactgtgatgttagaaccatttgatcttcctggaatgattgtatgtcaccaagaacca |
24747955 |
T |
|
| Q |
120 |
gagaaacctcttatcattgtagattcttcccatggtgggccttcttcggtttttcttgtggtaccgggcttggatggacgaaatcaaacaatatctttag |
219 |
Q |
| |
|
|| ||||||||| ||||||| |||||||| ||| | ||| ||||||||| || ||||||| || |||| || | |||||||| |||||||| |
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|
| T |
24747956 |
gaccaacctcttaccattgtaaattcttccagtggcgatgcttattcggtttt-ctactggtaccaggactggacagaagtaatcaaaccgcatctttag |
24748054 |
T |
|
| Q |
220 |
aatcacaaagcaataaagattgttacgtgcatagcgatatgagtgctggttcaggagttaagcttgtgtgcaagtctgcttctgaaactagttttaacca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||| |||||| | ||||||||||| |
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|
| T |
24748055 |
aatcacaaagcaataaagattgttacgtgcatagtgatatgagcgctggttcaagagttaagctcagatgcaagtctggatctgaagcaagttttaacca |
24748154 |
T |
|
| Q |
320 |
agcaactagttttgtttcagggaaaggattaaggcaatacaatccaatcagctttgtggctaaaggtgcaaatcagaattttcttttagagccactgttc |
419 |
Q |
| |
|
|| ||| ||||| ||||| ||||||||||||||||||||| |||| | ||| ||| |||||||||| ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
24748155 |
agaaacaagtttcgtttccgggaaaggattaaggcaataccatcctaccagttttttggctaaaggagcaaaccagaattttattttagagccattgttc |
24748254 |
T |
|
| Q |
420 |
aacttcagggatgagcactat |
440 |
Q |
| |
|
||||| ||||||||| ||||| |
|
|
| T |
24748255 |
aactttagggatgagaactat |
24748275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 24706799 - 24706871
Alignment:
| Q |
366 |
atcagctttgtggctaaaggtgcaaatcagaattttc-ttttagagccactgttcaacttcagggatgagcac |
437 |
Q |
| |
|
|||| ||||||||||||||| | ||| || ||||||| ||||||||||| |||| ||||||| | |||||||| |
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|
| T |
24706799 |
atcaactttgtggctaaaggaggaaaccataattttctttttagagccattgtttaacttcaagaatgagcac |
24706871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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