View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10022_high_1 (Length: 351)
Name: NF10022_high_1
Description: NF10022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10022_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 172 - 345
Target Start/End: Original strand, 30300194 - 30300367
Alignment:
| Q |
172 |
gataacctcattctccaacgtttccaccacaaagactggttaacctcaaaagaagcaacaaccttaacaaactctctaaaaaacccatctctctccttaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30300194 |
gataacctcattctccaacgtttccaccacaaagactggttaacctcaaaagaagcaacaaccttaacaaactctctaacaaacccatctctctccttaa |
30300293 |
T |
|
| Q |
272 |
caatcttccatctctactcttctcgcaaagactacaacccaactcaacctttctgtatctccctcaacaccaaa |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30300294 |
caatcttccatctctactcttctcgcaaagactacaacccaactcaacctttctgtatctccctcatcaccaaa |
30300367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 30300077 - 30300155
Alignment:
| Q |
40 |
ctccaaaatacaaccatgttttcccgaacccgttctctccttccttctctaacctcccacaaaacccaaaacccatcac |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300077 |
ctccaaaattcaaccatgttttcccgaacccgttctctccttccttctctaacctcccacaaaacccaaaacccatcac |
30300155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University