View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10022_low_1 (Length: 585)
Name: NF10022_low_1
Description: NF10022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10022_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 3128132 - 3127752
Alignment:
| Q |
20 |
aaatagattaaatacaataaatgctaactgatatcatttgctaattcaaatcctactcttgattctaattctaataactatatagtttggatgcaccaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3128132 |
aaatagattaaatacaataaatgctaactgatatcatttgctaattcaaatcctactcttgattctaattctaataactatatagtttggatgcaccaaa |
3128033 |
T |
|
| Q |
120 |
aagaaaaagatatatgatttggttctttgattctaacatgcttcaataaaagtcaaatttctgttacgagcaggattctatctggctttgaaatcaacaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3128032 |
aagaaaaagatatatgatttggttctttgattctaacatgcttcaataaaagtcaaatttctgttacgagcaggattctatctggctttgaaatcaacaa |
3127933 |
T |
|
| Q |
220 |
tggttatgtttgccatcaaatatttcaaatgccacttacttccttcccatcagggtttctcataacaacaccatcaacaacaggagacttccttgcctca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3127932 |
tggttatgtttgccatcaaatatttcaaatgccacttacttccttcccatcagggtttctcataacaacaccatcaacaacaggagacttccttgcctca |
3127833 |
T |
|
| Q |
320 |
gcatgagcatattcaggacctactgtatacacctacagtcatttgtcaaacatcagaaacatttgaaatacactacgcaac |
400 |
Q |
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| T |
3127832 |
gcatgagcatattcaggacctactgtatacacctacagtcattcgtcaaacatcagaaacatttgcaatacactacgcaac |
3127752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 443 - 574
Target Start/End: Complemental strand, 3127709 - 3127578
Alignment:
| Q |
443 |
ccagaccttaacatctgtccctccggttggcataaattcctcatatatataggagccttcacgcctcacacttcgcacctctgaatggaactcactggac |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3127709 |
ccagaccttaacatctgtccctccggttggcataaattcctcatatatataggagccttcacgcctcacacttcgcacctctgaatggaactcactggac |
3127610 |
T |
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| Q |
543 |
ctattaccaacctatgataatataacaccaaa |
574 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3127609 |
ctattaccaacctatgataatataacaccaaa |
3127578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 1919194 - 1919085
Alignment:
| Q |
253 |
acttacttccttcccatcagggtttctcataacaacaccatcaacaacaggagacttccttgcctcagcatgagcatattcaggacctactgtatacacc |
352 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1919194 |
acttacttccttcccatcaggatttctcataacaacaccatcaactacaggcgatttccttgcctcagcatgagcatattcagggcctactgtatacacc |
1919095 |
T |
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| Q |
353 |
tacagtcatt |
362 |
Q |
| |
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|||| ||||| |
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| T |
1919094 |
tacaatcatt |
1919085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 442 - 556
Target Start/End: Complemental strand, 1918974 - 1918860
Alignment:
| Q |
442 |
gccagaccttaacatctgtccctccggttggcataaattcctcatatatataggagccttcacgcctcacacttcgcacctctgaatggaactcactgga |
541 |
Q |
| |
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|||| |||||||||||||| |||||||||||||| || |||||||| ||||| || ||||| |||||||| |||| |||||||| |||||||||||| || |
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| T |
1918974 |
gccaaaccttaacatctgttcctccggttggcatgaactcctcataaatataagaaccttcgcgcctcacccttctcacctctggatggaactcactaga |
1918875 |
T |
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| Q |
542 |
cctattaccaaccta |
556 |
Q |
| |
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||| || |||||||| |
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| T |
1918874 |
cctgttgccaaccta |
1918860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 626250 - 626203
Alignment:
| Q |
23 |
tagattaaatacaataaatgctaactgatatcatttgctaattcaaat |
70 |
Q |
| |
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|||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
626250 |
tagaataaatacactaaatgctaactgatatgatttgctaattcaaat |
626203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 1824667 - 1824621
Alignment:
| Q |
28 |
taaatacaataaatgctaactgatatcatttgctaattcaaatccta |
74 |
Q |
| |
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|||||| |||| |||||||||||||| |||||| ||||||||||||| |
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| T |
1824667 |
taaataaaatatatgctaactgatatgatttgccaattcaaatccta |
1824621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 31389051 - 31389003
Alignment:
| Q |
23 |
tagattaaatacaataaatgctaactgatatcatttgctaattcaaatc |
71 |
Q |
| |
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|||| |||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
31389051 |
tagaataaatacaataaatgctagttgatataatttactaattcaaatc |
31389003 |
T |
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