View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10022_low_10 (Length: 241)
Name: NF10022_low_10
Description: NF10022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10022_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48541798 - 48541573
Alignment:
| Q |
1 |
cttgtatggtaaaaa-cggaagaaattaatgtataaatttatttcaatttgcagagattatactcagataataggaaggaaaagatggagcttctaaatg |
99 |
Q |
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| T |
48541798 |
cttgtatggtaaaaaacggaagaaattaatgtataaatttattccaatttgcagagattatactcagataataggaaggaaaagatggagcttctaaatg |
48541699 |
T |
|
| Q |
100 |
gattgtccataggaaaggttgatacttcaaacatttcacctcttcaacaggt-aactaaatgtgcaaccgtacgagtaaattaaatgtgtacttcaacag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48541698 |
gattgtccataggaaaggttgatacttcaaacatttcacctcttcaacaggtaaactaaatgtgcaaccgtacgagtaaattaaatgtgtacttcaacag |
48541599 |
T |
|
| Q |
199 |
cagattaatttacattactcgtacat |
224 |
Q |
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| T |
48541598 |
ctgattaatttacattactcatacat |
48541573 |
T |
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