View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10022_low_11 (Length: 239)
Name: NF10022_low_11
Description: NF10022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10022_low_11 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 55 - 277
Alignment:
| Q |
17 |
agttgtgtatctgatacaagtcaaacataaaacaaatttttaacccaaaatttggagttgaggtctaacttttaatttattgcttcatgaaaaattcatg |
116 |
Q |
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| T |
55 |
agttgtgtatctgatacaagtcaaacataaaacaaatttttgccccaaaatttggagttgaggtctaacttttaatttgttgcttcatgaaaaattcatg |
154 |
T |
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| Q |
117 |
cagcgtaaaatgttcaattttttcctactatccttttatctatatgtcttatatcattgacttggtcatgctgatgctgcagttgttaactattatatca |
216 |
Q |
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| T |
155 |
cagcgtaaaatgttcaattttttcctactatccttttatctatatgtcttatatcattgacttggtcatgctgatgctgcagttgttaactattatatca |
254 |
T |
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| Q |
217 |
tccatcgatgatctgaactatcc |
239 |
Q |
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| T |
255 |
tccatcgatgatctgaactatcc |
277 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 55824584 - 55824638
Alignment:
| Q |
17 |
agttgtgtatctgatacaagtcaaacataaaacaaatttttaacccaaaatttgg |
71 |
Q |
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| T |
55824584 |
agttgtgtatctgatacaagtcaaacataaaacaaatttttaccccaaaatttgg |
55824638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 56150397 - 56150343
Alignment:
| Q |
17 |
agttgtgtatctgatacaagtcaaacataaaacaaatttttaacccaaaatttgg |
71 |
Q |
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| T |
56150397 |
agttgtgtatctgatacaagtcaaacataaaacaaatttttaccccaaaatttgg |
56150343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 56152868 - 56152828
Alignment:
| Q |
17 |
agttgtgtatctgatacaagtcaaacataaaacaaattttt |
57 |
Q |
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| T |
56152868 |
agttgtgtatctgatacaagtcaaacataaaacaaattttt |
56152828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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