View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10022_low_7 (Length: 330)
Name: NF10022_low_7
Description: NF10022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10022_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 57 - 328
Target Start/End: Original strand, 48541875 - 48542145
Alignment:
| Q |
57 |
ttaggcacaaatgggatttgtttagcgacagcaagtgacatcaaatttttcaactgttgaggagaagaaggtaacataagatcttcaattttgtccaatc |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48541875 |
ttaggcacaaatgggatttgtttagcgacagcaagtgacatcaaatttttcaactgttgaggagaagaaggtaacataagatcttcaattttgtccaatc |
48541974 |
T |
|
| Q |
157 |
cagctcttttcaacaatgctatattgtgattctttgtcatattcacaccagaacttgcaataactactttctcaatcttctcttctcccaacatcttcgc |
256 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48541975 |
cagctcttttcaacaatgctatgttgtgattctttgtcatattcacaccagaacttgcaataactactttctcaatcttctcttctcccaacatcttcgc |
48542074 |
T |
|
| Q |
257 |
caaattatacgcaactattccaccataactcgttcccaccacgtggcactttttcacacctatgcttctcca |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48542075 |
caaattatacgcaactattccaccataactcgttcccaccacgtggcactttttcacacctat-cttctcca |
48542145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University