View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10023_low_1 (Length: 712)
Name: NF10023_low_1
Description: NF10023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10023_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 40892303 - 40891938
Alignment:
| Q |
11 |
gtgttatatactttgttattatcattaatccatcggtaaatatttctttattggcaaaggggattgtgagaagcttcttcatcaatggaatggaaaccct |
110 |
Q |
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| T |
40892303 |
gtgttatatactttgttattatcattaatcgataggtaaatatctctttattggcaaaggggattatgagaagcttcttcatcaatggaatggaaaccct |
40892204 |
T |
|
| Q |
111 |
atatgttttcaacgatgtttgtttctttgcaagttttaatatttatttttctgccacaatcttaaattggccaccatgttaacaaccgcttgtttcatgg |
210 |
Q |
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| T |
40892203 |
atatgttttcaacgatgtttgtttctttgcaagttttaatatttatttttctgccacaatcttaaattggccaccatgttaacaaccgcttgtttcatgg |
40892104 |
T |
|
| Q |
211 |
tatttcgtgttgcttaatgttgatttattttttagtttagttattggtactttgatatgcatttaggaatgctgtgcagttggctccatttatttgtttt |
310 |
Q |
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| T |
40892103 |
tatttcgtgttgcttaatgttgatttattttttagtttagttattggtactttgatatgcatttaggaatgctgtgcagttggctccatttatttgtttt |
40892004 |
T |
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| Q |
311 |
ctttggttgtcattagcttggccacaatcatgtagatcctatggattggatcgtaaggcattgttt |
376 |
Q |
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| T |
40892003 |
ctttggttgtcatttgcttggccacaataatgtagatcctatggattggatcgtaaggcattgttt |
40891938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 400 - 694
Target Start/End: Complemental strand, 40891919 - 40891624
Alignment:
| Q |
400 |
gacttttggaggtgcgatatacaggggaaaaattgagaaatcttccacattgtttttcccacagaattcattataagaaaattgtttgtggcacgacacc |
499 |
Q |
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| T |
40891919 |
gacttttgggggtgcgatatacaggggaaaaattgagaaatcttccacattgtttttcccacagaattcattataagaaaattgtttgtggcacgacaac |
40891820 |
T |
|
| Q |
500 |
aatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctct-ctcccccatgaattgtatgctatcca |
598 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
40891819 |
aatacaagcacgaaaacgcacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctccccccccatgtattgtatgctatccg |
40891720 |
T |
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| Q |
599 |
ttgatttcaacgtcgtgtgttgtcgtgggttattgagtcctgctagctagcattgctcttcatataaacccttttcgagttgtatgggttgagtat |
694 |
Q |
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| T |
40891719 |
ttgatttcaacgtcgtttgttgtcgtgggttattgaatcctgctagctaacattgctcttcatataaaccctcttcgagttgtatgggttgagtat |
40891624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 488 - 622
Target Start/End: Original strand, 3450073 - 3450207
Alignment:
| Q |
488 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattg |
587 |
Q |
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||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | || |
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| T |
3450073 |
tggcacgacaccaatacaaacacgaaaacgcacgacactaatataacccttggatgaataatgtgcagcattgcttttattctctctcccccatgtagtg |
3450172 |
T |
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| Q |
588 |
tatgctatccattgatttcaacgtcgtgtgttgtc |
622 |
Q |
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| T |
3450173 |
tatgctatccgttgattccaacgtcgtgtgttgtc |
3450207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 488 - 615
Target Start/End: Original strand, 34254388 - 34254516
Alignment:
| Q |
488 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttat-tctctctcccccatgaatt |
586 |
Q |
| |
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|||||||||||||| |||||| ||| |||||||||| ||||| |||||||||||| |||||||| |||||||||| | |||||||||||| || ||| |
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| T |
34254388 |
tggcacgacaccaacacaagcctgaatacacacgacaatgatatagcccttggatgaaaaatgtgcagcattgcttttttctctctctcccccgtgtatt |
34254487 |
T |
|
| Q |
587 |
gtatgctatccattgatttcaacgtcgtg |
615 |
Q |
| |
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|||| ||| || |||||| |||||||||| |
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| T |
34254488 |
gtatcctacccgttgattccaacgtcgtg |
34254516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 658
Target Start/End: Original strand, 26715224 - 26715392
Alignment:
| Q |
491 |
cacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcc-cccatgaattgta |
589 |
Q |
| |
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|||||||| | |||| |||||| ||| |||||||| ||||||||||||| | || |||||| || || ||| ||||||||||| |||||| |||||| |
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| T |
26715224 |
cacgacacaattacatgcacgagaacgcacgacacacgcataacccttggataatga-tgtgcagcactgttttaattctctctcctcccatgtattgta |
26715322 |
T |
|
| Q |
590 |
tgctatccattgatttcaacgtcgtgtgttgtcgtgggtta-ttgagtcctgctagctagcattgctctt |
658 |
Q |
| |
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||| || | | |||| || |||||||||||||||||| | ||||||| ||||| ||||| ||||||| |
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| T |
26715323 |
tgccattcgtcgattcgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgctctt |
26715392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 488 - 637
Target Start/End: Original strand, 10505507 - 10505648
Alignment:
| Q |
488 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattg |
587 |
Q |
| |
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||||||||||||||||||| ||||||| ||||| |||||| ||||||||||| ||||||| |||||||||||| | |||| ||| |||| |
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| T |
10505507 |
tggcacgacaccaatacaaacacgaaatg---cgacattgatataatccttggatgaataatgtgcggcattgcttttatcc-----ccccaatgtattg |
10505598 |
T |
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| Q |
588 |
tatgctatccattgatttcaacgtcgtgtgttgtcgtgggttattgagtc |
637 |
Q |
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||||||||||||||||| |||| | |||||||||||| ||| |||||||| |
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| T |
10505599 |
tatgctatccattgattccaacatggtgtgttgtcgttggtcattgagtc |
10505648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 596
Target Start/End: Complemental strand, 633924 - 633816
Alignment:
| Q |
488 |
tggcacgacaccaatacaagcacgaaaacacacgacaccaatataaccc-ttggatgaagaatgtgcaacattgcttttattctctctcccccatgaatt |
586 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||||| | ||||| ||||||||| ||||| ||| ||| |||||||||||||||||| | ||| |
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| T |
633924 |
tggcacgacatcaat-caagcacgaaaacgcacgacaccagttaaacccattggatgaataatgtacaagattttttttattctctctcccccgtatatt |
633826 |
T |
|
| Q |
587 |
gtatgctatc |
596 |
Q |
| |
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||||| |||| |
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| T |
633825 |
gtatgatatc |
633816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 628
Target Start/End: Complemental strand, 39606501 - 39606414
Alignment:
| Q |
540 |
gatgaagaatgtgcaacattgcttttattctctctcccccatgaattgtatgctatccattgatttcaacgtcgtgtgttgtcgtgggt |
628 |
Q |
| |
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|||||| |||||||| ||||||||||||| |||| |||||||| ||||||||||| || | |||||| | | |||||||||| ||||| |
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| T |
39606501 |
gatgaataatgtgcagcattgcttttattttctc-cccccatgtattgtatgctagccgtcgatttcgaaattgtgtgttgtcatgggt |
39606414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 656
Target Start/End: Complemental strand, 9522378 - 9522212
Alignment:
| Q |
491 |
cacgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcc-cccatgaattgta |
589 |
Q |
| |
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|||||||| | |||| |||||| ||| |||||||| |||| |||||||| | || |||||| || |||||| ||||||||||| |||||| |||||| |
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| T |
9522378 |
cacgacacaattacatgcacgagaacgcacgacacgcgcataaaccttggattatga-tgtgcagcactgctttaattctctctcctcccatgtattgta |
9522280 |
T |
|
| Q |
590 |
tgctatccattgatttcaacgtcgtgtgttgtcgtgggtta-ttgagtcctgctagctagcattgctc |
656 |
Q |
| |
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||| |||| ||||| || |||||||||||||||||| | ||||||| ||||| ||||| ||||| |
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| T |
9522279 |
tgccatccgacgatttgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgctc |
9522212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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