View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10023_low_2 (Length: 456)
Name: NF10023_low_2
Description: NF10023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10023_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 99 - 443
Target Start/End: Complemental strand, 46894498 - 46894154
Alignment:
| Q |
99 |
aaaatattttgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacnnnnnnncaatatgatccttataaattcgttgagtttatta |
198 |
Q |
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| T |
46894498 |
aaaatattatgtttattgaaatgtttcaaaaagtgatttggtaagaacaatagtcaaacaaaaaaacaatatgatccttataaattcgttgagtttatta |
46894399 |
T |
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| Q |
199 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
298 |
Q |
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| T |
46894398 |
tgtttctttagattattatagtgccatataaaaaataagcttgttctggattgtaggcaacatgaatcctagaggcaatacgaatcctctaggcgatgat |
46894299 |
T |
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| Q |
299 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
398 |
Q |
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| T |
46894298 |
agccttctcagacagtttgagttagaagaagaggcagaatccgatttgctctgtgacattgatggatgcaaagctgggaatagtacatgtagtagcttga |
46894199 |
T |
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| Q |
399 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgct |
443 |
Q |
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| T |
46894198 |
ttttggaaaaagaacattcaccaatcatgccttgcgatctctgct |
46894154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 46894646 - 46894561
Alignment:
| Q |
16 |
gacatcagacaagttgagaagtgttggtgctacaagagttgttatttgtttttcttgatgtgttaatttgattctgaaaaatgaaa |
101 |
Q |
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| T |
46894646 |
gacatcagacaagttgagaagtgttggtgctacaaaagttgttatttgtttttcttgatctgttaatttgattctgaaaaatgaaa |
46894561 |
T |
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