View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10025_high_4 (Length: 336)
Name: NF10025_high_4
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10025_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 42213540 - 42213231
Alignment:
| Q |
18 |
cgcaccagaatcgaatgaagcagaatagtcattctcttcaacaaacggcgaagactttcttctgttaccacgg---------cattcacgaagatcagtg |
108 |
Q |
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| T |
42213540 |
cgcaccagaattgaatgaagcagaatagtcattctcttcaacaaacggcgaagactttcttctgttaccacggtcaccacggcattcacgaagatcagtg |
42213441 |
T |
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| Q |
109 |
tttctctttgatgatgatacttgagtgcaaataaaagctacttgctttctcatattacaaaggtgagcagtttgtttttgctcttctgtcatgctgccaa |
208 |
Q |
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| T |
42213440 |
tttctctttgatgatgatacttgagtgcaaataaaagctacttgctttctcatattacaaaggtgagcagtttgtttttgctcttctgtcatgctgccag |
42213341 |
T |
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| Q |
209 |
tttcacttcctgttaaactcattccagtagctatcatcctaaataaggatcagcaacacactgttatattggtttaaccaaagaatcataagcataacta |
308 |
Q |
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| T |
42213340 |
tttcacttcctgttaaactcattccagtagctatcatcctaaataaggatcagcaacacactgttatattggtttaaccaaagaatcataagcataacta |
42213241 |
T |
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| Q |
309 |
ccaatttgat |
318 |
Q |
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| T |
42213240 |
ccaatttgat |
42213231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 147 - 299
Target Start/End: Complemental strand, 42206590 - 42206437
Alignment:
| Q |
147 |
tacttgctttctcatattacaaaggtgagcagtttgtttttgctcttctgtcatgctgccaatttcacttcctgttaaactcattccagtagctatcatc |
246 |
Q |
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| T |
42206590 |
tacttgctttctcagattacaaaggtgagcaatatgtttctgtttttttgtcatgcagccagctccacttcctgctaaactcattgcagtatctatcatc |
42206491 |
T |
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| Q |
247 |
c-taaataaggatcagcaacacactgttatattggtttaaccaaagaatcataa |
299 |
Q |
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| T |
42206490 |
cttaatttaagatcagtcacacactgttgcatttgtttaaccaaagaaacataa |
42206437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 42206695 - 42206640
Alignment:
| Q |
30 |
gaatgaagcagaatagtcattctcttcaacaaacggcgaagactttcttctgttac |
85 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||| |
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| T |
42206695 |
gaatgaagcagaatagtcgttctcttcaacaaacgacgaagaccttcttttgttac |
42206640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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