View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10025_low_1 (Length: 634)

Name: NF10025_low_1
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10025_low_1
NF10025_low_1
[»] scaffold0041 (2 HSPs)
scaffold0041 (19-405)||(37296-37682)
scaffold0041 (448-630)||(37071-37253)
[»] chr2 (3 HSPs)
chr2 (264-391)||(29926868-29926995)
chr2 (277-392)||(6788479-6788594)
chr2 (288-337)||(34549283-34549332)
[»] chr4 (5 HSPs)
chr4 (264-338)||(11358501-11358574)
chr4 (457-536)||(565208-565287)
chr4 (304-366)||(10462818-10462880)
chr4 (188-228)||(24156034-24156074)
chr4 (288-372)||(52700995-52701079)
[»] chr7 (1 HSPs)
chr7 (268-338)||(14669481-14669551)
[»] chr6 (1 HSPs)
chr6 (251-337)||(515959-516045)
[»] chr5 (3 HSPs)
chr5 (288-338)||(6217647-6217697)
chr5 (268-338)||(17676580-17676650)
chr5 (310-366)||(27769978-27770034)
[»] chr1 (1 HSPs)
chr1 (101-146)||(50457156-50457202)
[»] chr8 (2 HSPs)
chr8 (114-175)||(2986973-2987034)
chr8 (251-335)||(21145602-21145686)


Alignment Details
Target: scaffold0041 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 37682 - 37296
Alignment:
Q  19 aagttcactctgggaacacaattatgtaaggatagtagtcattttcgtctcttaatatgtaacgaatagttataatagtttctgattgttcacttttagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37682 aagttcactctgggaacacaattatgtaaggatagtagtcattttcgtcccttaatatgtaacgaatagttacaatagtttctgattgttcacttttagt 37583  T
Q  119 aaaaatagtatttgatgttaaaatgttttgttaatactctcaaatcagtctctcaatgtaataacttacttactctcatatcaattcatataagtatttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37582 aaaaatagtatttgatgttaaaatgttttgttaatactctcaaatcagtctctcaatgtaataacttacttactctcatatcaattcatataagtatttg 37483  T
Q  219 ttgtcatatctatctgtataagaaaagttaccgtcaacattgagtgactattataacgtcagagaatactttgactaacgaagcgcacaagcatggacta 318  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37482 ttgtcatatctatctgtataagaaaagttactgtcaacattgagtgactattttaacgtcagagaatactttgactaacgaagcgcacaagcatggacta 37383  T
Q  319 ttttagaattttgatacatttcacgattattaagactatttgttacacgttcaaagacgaaaatcgctattaccccgttatgttaag 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37382 ttttagaattttgatacatttcacgattattaagactatttgttacacgttcaaagacgaaaatcgctattaccccattatgttaag 37296  T

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Target: scaffold0041; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 448 - 630
Target Start/End: Complemental strand, 37253 - 37071
Alignment:
Q  448 tattccatgtatgtgatgtatttaacttcctcaactatcctattctgttgtatctaattctatgattaattgtaattacttgtatgtgatcatctctaat 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253 tattccatgtatgtgatgtatttaacttcctcaactatcctattctgttgtatctaattctatgattaattgtaattacttgtatgtgatcatctctaat 37154  T
Q  548 ttttggttataatactttgttacttttgatcctgccgtgcatgcatgccttggaaagcaaattggttcttgaaattttgttca 630  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  37153 ttgtggttataatactttgttacttttgatcctgccgtgcatgcatgccttggaaagcatattggctcttgaagttttgttca 37071  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 391
Target Start/End: Original strand, 29926868 - 29926995
Alignment:
Q  264 gactattataacgtcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatacatttcacgattattaagactatttgtta 363  Q
    ||||||| |||||||| ||| || ||||||||| |||  |||||| ||| |||||||||| |||||||||||||   | |||||||   ||||||| |||    
T  29926868 gactattttaacgtcaaagactattttgactaatgaaatgcacaatcattgactattttaaaattttgatacatcaaaggattattgcaactatttatta 29926967  T
Q  364 cacgttcaaagacgaaaatcgctattac 391  Q
    ||| ||||||||| |||||  |||||||    
T  29926968 cacattcaaagactaaaatgactattac 29926995  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 6788479 - 6788594
Alignment:
Q  277 tcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatacatttcacgattattaagactatttgttacacgttcaaagac 376  Q
    ||||||| || | |||||||| ||| |||||| ||   ||||||||| ||||||||||||||  | || ||||| ||||||||||||||| || || ||     
T  6788479 tcagagactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacattgaatgactattatgactatttgttacacatttaaggat 6788578  T
Q  377 gaaaatcgctattacc 392  Q
    ||||||  ||||||||    
T  6788579 gaaaatgactattacc 6788594  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 34549332 - 34549283
Alignment:
Q  288 tttgactaacgaagcgcacaagcatggactattttagaattttgatacat 337  Q
    ||||||||||||||  ||||  ||| ||||||||||||||||||||||||    
T  34549332 tttgactaacgaagtacacagtcatagactattttagaattttgatacat 34549283  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 11358574 - 11358501
Alignment:
Q  264 gactattataacgtcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatacatt 338  Q
    ||||||| |||||||||||| || |||||||||||||| |||||| |||||| |||||| |||||| ||||||||    
T  11358574 gactattttaacgtcagagactattttgactaacgaagtgcacaatcatggattatttt-gaatttcgatacatt 11358501  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 536
Target Start/End: Complemental strand, 565287 - 565208
Alignment:
Q  457 tatgtgatgtatttaacttcctcaactatcctattctgttgtatctaattctatgattaattgtaattacttgtatgtga 536  Q
    |||||||||||||||  |||| ||||  || |||| ||||||||||||||||| |||||||| ||| ||| | |||||||    
T  565287 tatgtgatgtatttagtttccacaacagtcttattatgttgtatctaattctaagattaattttaagtacctatatgtga 565208  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 10462818 - 10462880
Alignment:
Q  304 cacaagcatggactattttagaattttgatacatttcacgattattaagactatttgttacac 366  Q
    ||||| |||||||||||||| ||||||||||||||  | || ||||| ||||| |||||||||    
T  10462818 cacaatcatggactattttacaattttgatacattaaatgactattatgactacttgttacac 10462880  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 24156034 - 24156074
Alignment:
Q  188 ttactctcatatcaattcatataagtatttgttgtcatatc 228  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  24156034 ttactgtcatatcaattcttataagtatttattgtcatatc 24156074  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 52700995 - 52701079
Alignment:
Q  288 tttgactaacgaagcgcacaagcatggactattttagaattttgatacatttcacgattattaagactatttgttacacgttcaa 372  Q
    ||||| ||| |||| |||||| ||| |||||||||| ||||| |||||| || |  ||||||| || |||||||||||| |||||    
T  52700995 tttgattaaagaagtgcacaaacatagactattttaaaatttagatacagttaagaattattatgattatttgttacacattcaa 52701079  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 14669481 - 14669551
Alignment:
Q  268 attataacgtcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatacatt 338  Q
    ||||||||||||  || |||||||||||||  || |||||| || | ||||||||||||||||||||||||    
T  14669481 attataacgtcaaggactactttgactaacagagtgcacaatcaagaactattttagaattttgatacatt 14669551  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 515959 - 516045
Alignment:
Q  251 gtcaacattgagtgactattataacgtcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatacat 337  Q
    ||||| |||||| ||| ||  |||| ||||||| || |||||||||||||| |||||| ||| ||||||||| |||||| |||||||    
T  515959 gtcaatattgagggaccatcttaacatcagagactattttgactaacgaagtgcacaatcattgactattttggaatttcgatacat 516045  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 6217647 - 6217697
Alignment:
Q  288 tttgactaacgaagcgcacaagcatggactattttagaattttgatacatt 338  Q
    |||||||||||||| ||| || |||||||||||||  ||||||||||||||    
T  6217647 tttgactaacgaagtgcataatcatggactattttgaaattttgatacatt 6217697  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 17676650 - 17676580
Alignment:
Q  268 attataacgtcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatacatt 338  Q
    |||| |||||||  || |||||||||||||  || |||||| || | ||||||||||||||||||||||||    
T  17676650 attacaacgtcaaggactactttgactaacagagtgcacaatcaagaactattttagaattttgatacatt 17676580  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 27769978 - 27770034
Alignment:
Q  310 catggactattttagaattttgatacatttcacgattattaagactatttgttacac 366  Q
    ||||||||||||||||||||| |||||||  | || ||||| |||||||| ||||||    
T  27769978 catggactattttagaattttaatacattgaaagactattatgactatttattacac 27770034  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 50457156 - 50457202
Alignment:
Q  101 tgattgttcact-tttagtaaaaatagtatttgatgttaaaatgttt 146  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  50457156 tgattgtacactctttagtcaaaatagtatttgatgttaaaatgttt 50457202  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 2986973 - 2987034
Alignment:
Q  114 ttagtaaaaatagtatttgatgttaaaatgttttgttaatactctcaaatcagtctctcaat 175  Q
    ||||| |||||||||||| ||||||||||||||  |||||||| ||| || ||||| |||||    
T  2986973 ttagtcaaaatagtatttaatgttaaaatgtttcattaatactatcatattagtctttcaat 2987034  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 21145602 - 21145686
Alignment:
Q  251 gtcaacattgagtgactattataacgtcagagaatactttgactaacgaagcgcacaagcatggactattttagaattttgatac 335  Q
    |||| ||||||| ||||||| |||| ||||||| || ||||||||||||| |||| || |   ||||||||| |||||| |||||    
T  21145602 gtcagcattgagggactattttaacatcagagactattttgactaacgaaacgcataatctgagactattttggaatttcgatac 21145686  T

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