View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10025_low_11 (Length: 229)
Name: NF10025_low_11
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10025_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29611815 - 29612043
Alignment:
| Q |
1 |
aaaagagcattcatggtggatgtcatggctcccataccatgttgagaaacatggttgagcccaactaagagaaataaattgagagagagatgaattatat |
100 |
Q |
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| T |
29611815 |
aaaagagcattcatggtggatgtcatggctcccataccatgttgagaaacatggttgagcccaactaagagaaataaattgagagaaagatgaattatat |
29611914 |
T |
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| Q |
101 |
ggaattaatagaccaaagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataa |
200 |
Q |
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| T |
29611915 |
ggaattaatagaccaaagaatatgatacaattacggtaggatacacctttatattgtgatcccaagttaactaacataataaacttccatctaatcataa |
29612014 |
T |
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| Q |
201 |
ttaacttctaactacctacacaaattcta |
229 |
Q |
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| T |
29612015 |
ttaacttctaactacctaaacaaattcta |
29612043 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 38467228 - 38467139
Alignment:
| Q |
116 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaac |
205 |
Q |
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| T |
38467228 |
aagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaac |
38467139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 46958876 - 46959071
Alignment:
| Q |
17 |
tggatgtcatggctcccataccatgttgagaaacatggttgagcccaactaagagaaataaattgagagagagatgaattatatggaattaatagaccaa |
116 |
Q |
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| T |
46958876 |
tggatgttatggctctgataccatgttgaaaaccatggttga-cccaaccaaga-aaataaactgagagaaaggtgaataat-tggaattaataaaatga |
46958972 |
T |
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| Q |
117 |
agaatatgat-acaattacggtaggatacaactttatattgtga---tcccaagttaactaacataataaacttccatctaatcataattaacttctaa |
211 |
Q |
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| T |
46958973 |
agaatgtgataaaaattagggtagaatacacctttgtatagtgagtgatccaaggtaactaatctaacaaacttccacctaatcataactaacttctaa |
46959071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 25953296 - 25953405
Alignment:
| Q |
70 |
agaaataaattgagagagagatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacaactttatattgtgatcccaagtta |
169 |
Q |
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| T |
25953296 |
agaaataaattgagaaaaatatgaattattttgaaataatagaatgaagaatatgatataactagggtaggatacacttttatataataatcttaagtta |
25953395 |
T |
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| Q |
170 |
actaacataa |
179 |
Q |
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| T |
25953396 |
actaacataa |
25953405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 45518804 - 45518884
Alignment:
| Q |
34 |
ataccatgttgagaaacatggttgagcccaactaagag--aaataaattgagagagagatgaattatatggaattaataga |
112 |
Q |
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| T |
45518804 |
ataccatgttgagaagcatggtatagcccaacaaagagaaaaataaattgagagaaagattgattatttgaaattgataga |
45518884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 17236561 - 17236659
Alignment:
| Q |
116 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaacta |
214 |
Q |
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| T |
17236561 |
aagaatatgatacgattagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttctaacta |
17236659 |
T |
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