View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10025_low_3 (Length: 347)

Name: NF10025_low_3
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10025_low_3
NF10025_low_3
[»] chr7 (3 HSPs)
chr7 (21-271)||(47023989-47024239)
chr7 (81-271)||(21867752-21867942)
chr7 (273-337)||(21867711-21867774)
[»] chr8 (3 HSPs)
chr8 (81-271)||(18630237-18630427)
chr8 (81-271)||(18166683-18166873)
chr8 (81-271)||(15362808-15362998)
[»] chr5 (4 HSPs)
chr5 (81-271)||(1592892-1593082)
chr5 (81-271)||(7955495-7955685)
chr5 (273-337)||(1593060-1593123)
chr5 (273-337)||(7955663-7955726)
[»] chr1 (1 HSPs)
chr1 (81-271)||(34025145-34025335)
[»] chr4 (4 HSPs)
chr4 (81-271)||(30200289-30200479)
chr4 (81-271)||(45112723-45112892)
chr4 (273-337)||(30200248-30200311)
chr4 (273-337)||(45112682-45112745)
[»] chr2 (2 HSPs)
chr2 (81-271)||(12336127-12336317)
chr2 (142-268)||(604031-604157)
[»] chr3 (3 HSPs)
chr3 (273-337)||(20320974-20321037)
chr3 (273-337)||(34151719-34151782)
chr3 (235-271)||(20320960-20320996)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 47023989 - 47024239
Alignment:
Q  21 atggattcaatggttgaatgttccgcgcgcgactgctagccatttgctgctgcggtgctgaactgctggacagattctcggcatgccaggctgctgtacc 120  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  47023989 atggattcaatggttgaatattccgcgcgcggctgctagccatttgctgttacggtgctgaactgctggacagattctcggcttgccaggctgctgtacc 47024088  T
Q  121 agcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctg 220  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  47024089 agcagagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccaccactctgttgcagctgcatgtcaaaggtgttgggcagcttg 47024188  T
Q  221 ccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  47024189 ccagccttcaattaaatggcgtgcaacaacttgaaagagggtactcttgtt 47024239  T

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Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 81 - 271
Target Start/End: Complemental strand, 21867942 - 21867752
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21867942 aactgctggacagattctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccacc 21867843  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  21867842 attctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 21867752  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 21867774 - 21867711
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||    
T  21867774 acttgaaacagggtactcttgttatgtattaaaaaac-aagtatataccctgaccaatacctttg 21867711  T

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Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 18630237 - 18630427
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18630237 aactgctggacagattctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccacc 18630336  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  18630337 attctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagagtactcttgtt 18630427  T

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Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 18166683 - 18166873
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18166683 aactgctggacagattctcggcctgccaggctgctgtactagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccacc 18166782  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  18166783 attctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagagtactcttgtt 18166873  T

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Target: chr8; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 15362808 - 15362998
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  15362808 aactgctggacagattctcgacctgccaggctgcagtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgacattcgagcgggcatccacc 15362907  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||  | ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||||||||||||    
T  15362908 attctgttgatgttgcatgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacatggtactcttgtt 15362998  T

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Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 1592892 - 1593082
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1592892 aactgctgaacagattctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccacc 1592991  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  1592992 attctgttgctgttgcatgtcaaaggtgttgggcagtctgccagccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 1593082  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 7955495 - 7955685
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  7955495 aactgctggacagattctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgacattcgagcgggcatccacc 7955594  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  7955595 attctgttgctgttgcatgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 7955685  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 1593060 - 1593123
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||    
T  1593060 acttgaaacagggtactcttgttatgtattaaaaaac-aagtatataccatgaccaatacctttg 1593123  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 7955663 - 7955726
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||    
T  7955663 acttgaaacagggtactcttgttatgtattaaaaaac-aagtatataccctgaccaatacctttg 7955726  T

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Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 34025145 - 34025335
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34025145 aactgctggacagattctcggcctgccaggctgctgtactagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccacc 34025244  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  34025245 attctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaacagagtactcttgtt 34025335  T

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Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 81 - 271
Target Start/End: Complemental strand, 30200479 - 30200289
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  30200479 aactgttggacagattctcggcctgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatccccc 30200380  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  30200379 attctgttgttgttgcatgtcaaaggtgttgggcagcctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 30200289  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 271
Target Start/End: Complemental strand, 45112892 - 45112723
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||        
T  45112892 aactgttggacagattctcggcctgccaggctgctgtaccagtggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgggcatc---- 45112797  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
                     |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  45112796 -----------------tgtcaaaggtgttgggcagcctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 45112723  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 30200311 - 30200248
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||    
T  30200311 acttgaaacagggtactcttgttatgtattaaaaaac-aagtatataccctgaccaatacctttg 30200248  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 45112745 - 45112682
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||    
T  45112745 acttgaaacagggtactcttgttatgtattaaaaaaa-aagtatataccctgaccaatacctttg 45112682  T

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Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 12336127 - 12336317
Alignment:
Q  81 aactgctggacagattctcggcatgccaggctgctgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgatattcgagcgcgcatccacc 180  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  12336127 aactgctggacagattctcgacctgccaggctgttgtaccagcggagctgggccgcgcaaatgcgagtttcggtgactgacattcgagcgggcatccacc 12336226  T
Q  181 attctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||||||  | ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||||||||||||    
T  12336227 attctgttgttgttgcatgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacatggtactcttgtt 12336317  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 604157 - 604031
Alignment:
Q  142 tgcgagtttcggtgactgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggca 241  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||     
T  604157 tgcgagtttcgatgactgatattcgagcgcgcatccaccattctgctgctgttgcatgtcaaaggtgttgggcagtctgccagccttcaattaaatggcg 604058  T
Q  242 tgcaacaacttgaaacagggtactctt 268  Q
    || ||||||||||||||||||||||||    
T  604057 tgtaacaacttgaaacagggtactctt 604031  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 20320974 - 20321037
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||    
T  20320974 acttgaaacagggtactcttgttatgtatt-aaaaaataagtatataccctgaccaatacctttg 20321037  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 34151719 - 34151782
Alignment:
Q  273 acttgaaacagggtactcttgttatgtattnnnnnnntaagtatataccgtgaccaatacctttg 337  Q
    ||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||    
T  34151719 acttgaaacagggtactcttgttatgtatt-aaaaaataagtatataccctgaccaatacctttg 34151782  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 20320960 - 20320996
Alignment:
Q  235 aatggcatgcaacaacttgaaacagggtactcttgtt 271  Q
    |||||| | ||||||||||||||||||||||||||||    
T  20320960 aatggcgtacaacaacttgaaacagggtactcttgtt 20320996  T

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