View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10025_low_5 (Length: 328)

Name: NF10025_low_5
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10025_low_5
NF10025_low_5
[»] chr2 (29 HSPs)
chr2 (1-311)||(37840373-37840690)
chr2 (1-62)||(2324276-2324337)
chr2 (2-71)||(10571007-10571076)
chr2 (4-61)||(36352147-36352204)
chr2 (1-62)||(40379431-40379492)
chr2 (2-62)||(14466397-14466457)
chr2 (1-56)||(17719436-17719491)
chr2 (1-51)||(15461010-15461060)
chr2 (9-62)||(93341-93394)
chr2 (1-62)||(2029805-2029866)
chr2 (1-62)||(5509115-5509176)
chr2 (8-61)||(15124771-15124824)
chr2 (1-62)||(16419303-16419364)
chr2 (1-62)||(28407780-28407841)
chr2 (4-48)||(37769944-37769988)
chr2 (1-56)||(27897599-27897654)
chr2 (1-52)||(42895056-42895107)
chr2 (4-62)||(5711662-5711720)
chr2 (4-50)||(15124547-15124593)
chr2 (4-62)||(27036402-27036460)
chr2 (1-50)||(9153818-9153867)
chr2 (1-38)||(16419538-16419575)
chr2 (1-38)||(17854940-17854977)
chr2 (1-38)||(19191621-19191658)
chr2 (1-62)||(29718364-29718425)
chr2 (1-38)||(40379220-40379257)
chr2 (1-38)||(42639625-42639662)
chr2 (2-38)||(5711450-5711486)
chr2 (50-98)||(32667093-32667141)
[»] chr8 (33 HSPs)
chr8 (1-98)||(26800463-26800560)
chr8 (1-62)||(24532408-24532469)
chr8 (1-62)||(5932171-5932232)
chr8 (1-62)||(39052916-39052977)
chr8 (2-62)||(11232181-11232241)
chr8 (2-62)||(11232416-11232476)
chr8 (4-62)||(422440-422498)
chr8 (1-59)||(38475783-38475841)
chr8 (1-62)||(38476074-38476135)
chr8 (1-65)||(8466708-8466772)
chr8 (1-44)||(4828329-4828372)
chr8 (1-44)||(4963390-4963433)
chr8 (1-56)||(5590361-5590416)
chr8 (4-62)||(8716153-8716211)
chr8 (1-51)||(37001500-37001550)
chr8 (1-38)||(4828104-4828141)
chr8 (1-50)||(5931948-5931997)
chr8 (1-38)||(7267476-7267513)
chr8 (1-62)||(8084163-8084224)
chr8 (1-38)||(8929053-8929090)
chr8 (1-62)||(10884101-10884161)
chr8 (1-62)||(17469854-17469915)
chr8 (1-38)||(19256597-19256634)
chr8 (1-62)||(19256807-19256868)
chr8 (1-62)||(20301297-20301358)
chr8 (1-62)||(21087929-21087990)
chr8 (1-38)||(24075317-24075354)
chr8 (1-38)||(34653186-34653223)
chr8 (1-62)||(37001262-37001323)
chr8 (1-38)||(39960228-39960265)
chr8 (1-38)||(42846616-42846653)
chr8 (1-61)||(16962234-16962294)
chr8 (50-98)||(25186638-25186686)
[»] chr5 (36 HSPs)
chr5 (1-94)||(8081068-8081161)
chr5 (1-62)||(24346724-24346785)
chr5 (1-62)||(9368631-9368692)
chr5 (1-62)||(24528576-24528637)
chr5 (1-62)||(24270093-24270153)
chr5 (1-62)||(41666980-41667041)
chr5 (1-52)||(15480595-15480646)
chr5 (8-62)||(32908939-32908993)
chr5 (4-50)||(37405128-37405174)
chr5 (1-62)||(2063721-2063782)
chr5 (1-62)||(18333686-18333747)
chr5 (1-62)||(21209908-21209969)
chr5 (50-98)||(3015562-3015610)
chr5 (1-44)||(8287837-8287880)
chr5 (1-56)||(19522123-19522178)
chr5 (1-64)||(25258286-25258349)
chr5 (1-64)||(25322076-25322139)
chr5 (4-50)||(6080063-6080109)
chr5 (1-51)||(25258092-25258142)
chr5 (1-51)||(25321882-25321932)
chr5 (1-62)||(29434111-29434173)
chr5 (1-50)||(60123-60172)
chr5 (1-38)||(95277-95314)
chr5 (1-38)||(7369760-7369797)
chr5 (1-62)||(8098353-8098414)
chr5 (1-62)||(15480358-15480419)
chr5 (53-98)||(15510651-15510696)
chr5 (1-38)||(18333476-18333513)
chr5 (1-62)||(24531635-24531696)
chr5 (1-38)||(27133004-27133041)
chr5 (1-78)||(37656908-37656985)
chr5 (1-78)||(37782021-37782098)
chr5 (1-38)||(41666768-41666805)
chr5 (6-62)||(14314654-14314710)
chr5 (50-98)||(36878441-36878489)
chr5 (50-98)||(39268137-39268185)
[»] chr7 (31 HSPs)
chr7 (2-61)||(48243425-48243484)
chr7 (2-78)||(6782898-6782974)
chr7 (1-62)||(17202215-17202276)
chr7 (1-62)||(25620172-25620233)
chr7 (1-62)||(26239903-26239964)
chr7 (1-62)||(34027429-34027490)
chr7 (50-98)||(6751651-6751699)
chr7 (2-62)||(40121911-40121971)
chr7 (1-64)||(31257252-31257315)
chr7 (1-51)||(3038082-3038132)
chr7 (4-62)||(40746304-40746362)
chr7 (1-38)||(11211690-11211727)
chr7 (1-62)||(48417502-48417563)
chr7 (50-98)||(258544-258592)
chr7 (2-62)||(21861331-21861391)
chr7 (50-98)||(23821476-23821524)
chr7 (2-62)||(29469642-29469702)
chr7 (1-61)||(30727343-30727403)
chr7 (1-56)||(2544440-2544495)
chr7 (51-98)||(5266225-5266272)
chr7 (11-58)||(23796175-23796222)
chr7 (1-51)||(21054951-21055001)
chr7 (1-51)||(36993072-36993122)
chr7 (1-62)||(23796010-23796071)
chr7 (1-42)||(26028968-26029009)
chr7 (1-62)||(33996298-33996359)
chr7 (1-38)||(48243072-48243109)
chr7 (2-62)||(1596631-1596690)
chr7 (50-98)||(6813224-6813272)
chr7 (2-62)||(31485646-31485706)
chr7 (1-37)||(33834454-33834490)
[»] chr4 (41 HSPs)
chr4 (1-86)||(400528-400613)
chr4 (1-78)||(21498390-21498467)
chr4 (1-62)||(35609698-35609759)
chr4 (1-62)||(22231295-22231356)
chr4 (1-62)||(52559603-52559664)
chr4 (1-53)||(11036507-11036559)
chr4 (2-62)||(22445489-22445549)
chr4 (2-56)||(37836117-37836171)
chr4 (1-63)||(50543316-50543378)
chr4 (4-62)||(53828510-53828568)
chr4 (1-62)||(1518200-1518261)
chr4 (1-62)||(11036733-11036794)
chr4 (1-62)||(14783174-14783235)
chr4 (1-62)||(25052888-25052949)
chr4 (1-62)||(35788695-35788756)
chr4 (2-62)||(4645679-4645739)
chr4 (50-98)||(14945009-14945057)
chr4 (50-98)||(17077085-17077133)
chr4 (50-98)||(28245903-28245951)
chr4 (2-62)||(40716608-40716668)
chr4 (50-98)||(49380822-49380870)
chr4 (1-52)||(5398473-5398524)
chr4 (8-62)||(40717428-40717482)
chr4 (1-62)||(4464331-4464392)
chr4 (1-38)||(5398223-5398260)
chr4 (1-62)||(6218240-6218301)
chr4 (1-62)||(7926364-7926425)
chr4 (8-61)||(12869251-12869304)
chr4 (1-38)||(21498831-21498868)
chr4 (1-46)||(21750045-21750090)
chr4 (1-38)||(22845458-22845495)
chr4 (1-38)||(22863510-22863547)
chr4 (1-50)||(28073180-28073229)
chr4 (1-38)||(35788930-35788967)
chr4 (1-62)||(50543554-50543615)
chr4 (5-53)||(2516239-2516287)
chr4 (50-98)||(10390417-10390464)
chr4 (9-61)||(17111607-17111659)
chr4 (8-56)||(32002366-32002414)
chr4 (9-61)||(35485271-35485323)
chr4 (1-53)||(35819124-35819176)
[»] chr3 (40 HSPs)
chr3 (1-98)||(39269367-39269464)
chr3 (1-62)||(1723063-1723124)
chr3 (1-62)||(45138958-45139019)
chr3 (1-62)||(54368552-54368613)
chr3 (1-62)||(54567928-54567989)
chr3 (1-56)||(12930121-12930176)
chr3 (1-56)||(20327842-20327897)
chr3 (1-56)||(22729136-22729191)
chr3 (1-51)||(8019004-8019054)
chr3 (4-61)||(4155363-4155420)
chr3 (1-62)||(11589821-11589882)
chr3 (1-62)||(16239627-16239688)
chr3 (1-62)||(20303372-20303433)
chr3 (1-62)||(23708211-23708272)
chr3 (1-62)||(23726667-23726728)
chr3 (1-62)||(23745123-23745184)
chr3 (1-62)||(24063648-24063709)
chr3 (1-50)||(34610597-34610646)
chr3 (1-62)||(45828055-45828116)
chr3 (1-62)||(49629641-49629702)
chr3 (50-98)||(40926568-40926616)
chr3 (1-56)||(13574914-13574969)
chr3 (1-44)||(13741106-13741149)
chr3 (1-48)||(20327615-20327662)
chr3 (1-52)||(26272321-26272372)
chr3 (16-78)||(21833399-21833461)
chr3 (1-51)||(24866233-24866283)
chr3 (50-92)||(33909779-33909821)
chr3 (1-38)||(13574695-13574732)
chr3 (1-62)||(17638270-17638331)
chr3 (1-62)||(23691411-23691472)
chr3 (1-62)||(29575877-29575938)
chr3 (1-62)||(33640081-33640142)
chr3 (50-95)||(35015395-35015440)
chr3 (1-38)||(35038205-35038242)
chr3 (1-38)||(50052550-50052587)
chr3 (1-61)||(16926937-16926997)
chr3 (50-98)||(26927021-26927069)
chr3 (50-98)||(32034205-32034253)
chr3 (1-49)||(45828282-45828330)
[»] chr1 (32 HSPs)
chr1 (1-62)||(2859614-2859675)
chr1 (1-62)||(17452815-17452876)
chr1 (1-62)||(33156769-33156830)
chr1 (1-56)||(4112999-4113054)
chr1 (3-62)||(35772067-35772126)
chr1 (4-62)||(11234255-11234313)
chr1 (1-62)||(25145707-25145768)
chr1 (4-69)||(40316030-40316095)
chr1 (1-50)||(52650770-52650819)
chr1 (1-61)||(3169802-3169862)
chr1 (2-62)||(29265990-29266050)
chr1 (1-61)||(35892327-35892387)
chr1 (1-69)||(50882700-50882768)
chr1 (2-62)||(51460429-51460489)
chr1 (50-101)||(6238276-6238327)
chr1 (1-52)||(25255347-25255398)
chr1 (1-56)||(51589028-51589083)
chr1 (1-64)||(51589262-51589325)
chr1 (1-35)||(3170037-3170071)
chr1 (1-62)||(9146851-9146912)
chr1 (1-62)||(11525033-11525094)
chr1 (11-52)||(16162979-16163020)
chr1 (1-38)||(17452690-17452727)
chr1 (20-61)||(22100138-22100179)
chr1 (1-62)||(38668161-38668222)
chr1 (1-38)||(40079188-40079225)
chr1 (1-62)||(51589842-51589903)
chr1 (50-98)||(2997202-2997250)
chr1 (50-98)||(11590534-11590582)
chr1 (4-44)||(25137308-25137348)
chr1 (50-98)||(29413256-29413304)
chr1 (50-98)||(38871096-38871144)
[»] scaffold0092 (1 HSPs)
scaffold0092 (2-62)||(5692-5752)
[»] chr6 (30 HSPs)
chr6 (1-62)||(4868800-4868861)
chr6 (11-64)||(5608935-5608988)
chr6 (2-62)||(13353238-13353298)
chr6 (1-65)||(30256848-30256912)
chr6 (2-62)||(33796363-33796423)
chr6 (1-56)||(33494575-33494630)
chr6 (4-62)||(6542930-6542988)
chr6 (1-62)||(8026425-8026486)
chr6 (1-62)||(9705056-9705117)
chr6 (1-38)||(9705290-9705327)
chr6 (50-98)||(11316958-11317006)
chr6 (1-61)||(24554153-24554213)
chr6 (1-56)||(3680048-3680103)
chr6 (47-82)||(13692330-13692365)
chr6 (47-98)||(24558695-24558746)
chr6 (1-44)||(27656494-27656537)
chr6 (1-51)||(5648670-5648720)
chr6 (1-51)||(6400618-6400668)
chr6 (1-38)||(4868588-4868625)
chr6 (1-38)||(8026640-8026677)
chr6 (1-62)||(12330166-12330227)
chr6 (1-50)||(13740952-13741001)
chr6 (1-50)||(13746452-13746501)
chr6 (1-62)||(30256614-30256675)
chr6 (50-98)||(2904909-2904957)
chr6 (4-52)||(11721944-11721992)
chr6 (2-50)||(16570196-16570244)
chr6 (50-98)||(19712550-19712598)
chr6 (1-62)||(19712750-19712813)
chr6 (50-98)||(29742580-29742628)
[»] scaffold0519 (2 HSPs)
scaffold0519 (2-62)||(1953-2013)
scaffold0519 (2-38)||(2188-2224)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-59)||(12683-12741)
[»] scaffold0692 (2 HSPs)
scaffold0692 (1-50)||(5543-5592)
scaffold0692 (1-62)||(5741-5802)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-62)||(3458-3519)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-62)||(14339-14400)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-62)||(56495-56556)
[»] scaffold0048 (2 HSPs)
scaffold0048 (2-62)||(81879-81939)
scaffold0048 (2-50)||(82113-82161)
[»] scaffold0027 (1 HSPs)
scaffold0027 (43-98)||(121432-121487)
[»] scaffold1138 (1 HSPs)
scaffold1138 (58-98)||(2020-2060)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 37840373 - 37840690
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaagggtcacctaccaattcacgcacaa 100  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37840373 cacaagccggttttgtggggttgtgttgggcccaaccacaatttttaagatggtattagagcttgtcgaatttaaaggtcacctaccaattcacgcacaa 37840472  T
Q  101 aaagttggtatatttataggcacca--------tttgatttttagtgtcgctcttaattgtaaaccaaaatgtatttggcccctgtccaaccaatttatc 192  Q
    |||||||||||||||||||||||||        |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37840473 aaagttggtatatttataggcaccaaaaacatatttggtttttagtgttgctcttaattgtaaaccaaaatgtatttggcccctgtccaaccaatttatc 37840572  T
Q  193 ttgcataggtcaactcttgggatgttataattcatctggtaattaagttgagacaaaaagctgtggaacattgcaaaatgtcttttcatatgtttcatca 292  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37840573 ttgcatag-tcaactcttgggatgttataattcatctggtaattaagttgagacaaaaagctgtggaacattgcaaaatgtcttttcatatgtttcatca 37840671  T
Q  293 cttccaaacaactttaaag 311  Q
    |||||||||||||||||||    
T  37840672 cttccaaacaactttaaag 37840690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2324276 - 2324337
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||||| ||||||| |||||    
T  2324276 cacaagccggttttgtggggttgtgttaggcccaaccacgatttttaatatggtatcagagc 2324337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 10571007 - 10571076
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaat 71  Q
    |||||||||||||||||||||||||| | | ||||||  |||| ||||||||||| |||| |||||||||    
T  10571007 acaagccggttttgtggggttgtgttaggctcaaccacgatttctaagatggtatcagagtttgtcgaat 10571076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 36352204 - 36352147
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||||||||| |   |||||| ||||||||||||||||||||||    
T  36352204 aagccggttttgtggggttgtgttaggttcaaccacaatttttaagatggtattagag 36352147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40379492 - 40379431
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  40379492 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 40379431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 14466457 - 14466397
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  14466457 acaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 14466397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17719436 - 17719491
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||||||||||||| |||||||||| | |||||||| ||||| |||||||||||    
T  17719436 cacaagccggttttgtcgggttgtgttcggcccaaccacaatttctaagatggtat 17719491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15461010 - 15461060
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    |||||| | |||||||||||||||||| ||| |||||||||||||||||||    
T  15461010 cacaagacagttttgtggggttgtgttagactcaaccataatttttaagat 15461060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 93394 - 93341
Alignment:
Q  9 ggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||| | ||||||||  |||||||||||||||| |||||    
T  93394 ggttttgtggggttgtgttaggcccaaccacgatttttaagatggtatcagagc 93341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2029805 - 2029866
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||| || | ||||||||  |||| ||||||||||| |||||    
T  2029805 cacaagccggttttgtggggttgttttaggcccaaccacgatttctaagatggtatcagagc 2029866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5509115 - 5509176
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||| ||| ||||||| |||||    
T  5509115 cacaagctggttttgtggggttgtgttaggcccaaccatgatttctaatatggtatcagagc 5509176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 15124824 - 15124771
Alignment:
Q  8 cggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||||| ||||||||||  |||| ||||||||||| ||||    
T  15124824 cggttttgtggggttgtgttagacccaaccacgatttctaagatggtatcagag 15124771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16419303 - 16419364
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||| || | ||||||||  |||| ||||||||||| |||||    
T  16419303 cacaagccggttttgtggggttgtattaggcccaaccacgatttctaagatggtatcagagc 16419364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28407841 - 28407780
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||| |||||||| | ||||||||  |||| ||||||||||| |||||    
T  28407841 cacaagccggttttgtggagttgtgttaggcccaaccacgatttctaagatggtatcagagc 28407780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 37769988 - 37769944
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaa 48  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||    
T  37769988 aagccggttttgtggggttgtgttagacccaaccacgatttttaa 37769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27897654 - 27897599
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||| |||||||||||||||||||| | ||||||||  |||| |||||||||||    
T  27897654 cacaagtcggttttgtggggttgtgttaggcccaaccaccatttctaagatggtat 27897599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42895056 - 42895107
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    |||||||||||||||| |||||||||| ||| | |||||||||| |||||||    
T  42895056 cacaagccggttttgtagggttgtgttagactcgaccataatttctaagatg 42895107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 5711720 - 5711662
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||| | ||||||||  |||| |||||| |||| |||||    
T  5711720 aagccggttttgtggggttgtgttaggcccaaccaccatttctaagatagtatcagagc 5711662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 15124593 - 15124547
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  15124593 aagccgattttgtggggttgtgttagacccaaccacgatttttaaga 15124547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 27036460 - 27036402
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||| |||||||||| | ||||||||| |||| ||| ||||||| |||||    
T  27036460 aagccggttttgtagggttgtgttaggcccaaccatgatttctaatatggtatcagagc 27036402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9153867 - 9153818
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||||||||| |||||||||||||||| ||||| || ||||| |||||    
T  9153867 cacaagccggttatgtggggttgtgttgggcccaatcacaatttctaaga 9153818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16419538 - 16419575
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  16419538 cacaagccggttttgtggggttgtgttaggcccaacca 16419575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17854977 - 17854940
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  17854977 cacaagccggttttgtggggttgtgctagacccaacca 17854940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19191658 - 19191621
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  19191658 cacaagccggttttgtggggttgtgttaggcccaacca 19191621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29718364 - 29718425
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | || |||||  |||| |||| |||||| |||||    
T  29718364 cacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagttggtatcagagc 29718425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40379257 - 40379220
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  40379257 cacaagccggttttgtggggttgtgttaggcccaacca 40379220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42639662 - 42639625
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  42639662 cacaagctggttttgtggggttgtgttagacccaacca 42639625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 5711486 - 5711450
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaacca 38  Q
    |||||||||||||||||||||||||| | ||||||||    
T  5711486 acaagccggttttgtggggttgtgttaggcccaacca 5711450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 32667093 - 32667141
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| || ||||| ||||||||||    
T  32667093 atggtatcagagcttgtcgaattcaagggccatctaccgattcacgcac 32667141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26800560 - 26800463
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| ||  ||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  26800560 cacaagccggttttgtggggttgtgttaggcccaaccacaatttctattatggtattagagcctgtcgaattcaagggccacctaccgattcacgcac 26800463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24532469 - 24532408
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||| |||||    
T  24532469 cacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagc 24532408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5932232 - 5932171
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||| |||||||||||||||||| | ||||||||  |||||||||||||||| |||||    
T  5932232 cacaagcctgttttgtggggttgtgttaggcccaaccaccatttttaagatggtatcagagc 5932171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39052977 - 39052916
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | |||||| |  |||| |||||||||||||||||    
T  39052977 cacaagccggttttgtggggttgtgttaggcccaacaacgatttctaagatggtattagagc 39052916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 11232241 - 11232181
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  11232241 acaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 11232181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 11232476 - 11232416
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  11232476 acaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 11232416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 422498 - 422440
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||||||||| | |||||||| ||||| ||||||||||| |||||    
T  422498 aagccgattttgtggggttgtgtttggcccaaccacaatttctaagatggtatcagagc 422440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38475783 - 38475841
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattag 59  Q
    |||||||||||||||| |||||||||| | |||||||| || || ||||||||||||||    
T  38475783 cacaagccggttttgtagggttgtgttaggcccaaccacaaattctaagatggtattag 38475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38476074 - 38476135
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||| || |||| | |||||||| ||||| ||||||||||| |||||    
T  38476074 cacaagccggttttgtgggattatgttaggcccaaccacaatttctaagatggtatcagagc 38476135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8466772 - 8466708
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttg 65  Q
    ||||||| |||||| |||||||||||  |||||||||| ||||| ||||||||||| | ||||||    
T  8466772 cacaagctggttttatggggttgtgtacgacccaaccacaatttctaagatggtatcaaagcttg 8466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4828329 - 4828372
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataattt 44  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  4828329 cacaagccggttttgtggggttgtgttaggcccaaccacaattt 4828372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4963390 - 4963433
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataattt 44  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  4963390 cacaagccggttttgtggggttgtgttaggcccaaccacaattt 4963433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5590416 - 5590361
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||| ||||||||| | |||||||| ||||| ||| |||||||    
T  5590416 cacaagccggttttgtgaggttgtgttaggcccaaccacaatttctaaaatggtat 5590361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 8716153 - 8716211
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||||||||| ||||||||||  |||| ||| ||||||| |||||    
T  8716153 aagccgattttgtggggttgtgttagacccaaccaagatttctaatatggtatcagagc 8716211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37001500 - 37001550
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||    
T  37001500 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 37001550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4828104 - 4828141
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  4828104 cacaagccggttttgtggggttgtgttaggcccaacca 4828141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5931997 - 5931948
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||||||||||||||||||| |||| | ||||||||  ||||||||||    
T  5931997 cacaagccggttttgtggggttatgttaggcccaaccaccatttttaaga 5931948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7267513 - 7267476
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  7267513 cacaagccggttttgtagggttgtgttagacccaacca 7267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8084163 - 8084224
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||| ||||||| || |||||||| ||||||||||  |||| ||||||||||| |||||    
T  8084163 cacaagctggttttgcggagttgtgttagacccaaccacgatttctaagatggtatcagagc 8084224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8929053 - 8929090
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  8929053 cacaagccggttttgtggggttgtgttaggcccaacca 8929090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10884101 - 10884161
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||| ||||||| | ||||||||  |||| ||||||||||| |||||    
T  10884101 cacaagccggttttgtggg-ttgtgttaggcccaaccacgatttctaagatggtatcagagc 10884161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17469854 - 17469915
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | | ||||||  |||| ||| ||||||| |||||    
T  17469854 cacaagccggttttgtggggttgtgttaggctcaaccacgatttctaatatggtatcagagc 17469915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19256634 - 19256597
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  19256634 cacaagccggttttgtggggttgtgttaggcccaacca 19256597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19256868 - 19256807
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||| ||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  19256868 cacaagcaggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 19256807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20301297 - 20301358
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||| |||||||| ||||||||| | ||||||||  |||| ||||||||||| |||||    
T  20301297 cacaagcccgttttgtgaggttgtgttaggcccaaccacgatttctaagatggtatcagagc 20301358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21087929 - 21087990
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||| |||||||| ||||||||| | ||||||||  |||| ||||||||||| |||||    
T  21087929 cacaagcccgttttgtgaggttgtgttaggcccaaccacgatttctaagatggtatcagagc 21087990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24075354 - 24075317
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  24075354 cacaagccggttttgtggggttgtgttaggcccaacca 24075317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34653186 - 34653223
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  34653186 cacaagccggttttgtggggttgtgttaggcccaacca 34653223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37001262 - 37001323
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||| |||||||| | ||||||||  ||||  |||||||||| |||||    
T  37001262 cacaagccggttttgtggagttgtgttaggcccaaccacgatttcaaagatggtatcagagc 37001323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39960228 - 39960265
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  39960228 cacaagccggttttgtggggttgtgttaggcccaacca 39960265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42846653 - 42846616
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  42846653 cacaagccggttttgtggggttgtgttaggcccaacca 42846616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16962294 - 16962234
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    ||||| ||||||||||||| ||||||| |  ||||||| |||||||||||| |||| ||||    
T  16962294 cacaaaccggttttgtgggattgtgttaggtccaaccacaatttttaagattgtatcagag 16962234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 25186638 - 25186686
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||| ||||||||| |||||||||||||  ||||||||||    
T  25186638 atggtatcagagcctgtcgaattcaagggtcacctactgattcacgcac 25186686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8081161 - 8081068
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaagggtcacctaccaattcac 94  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||| ||||| |||||| || ||||| |||||||| ||||||    
T  8081161 cacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagcctgtcgatttcaagggccacctaccgattcac 8081068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24346785 - 24346724
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||    
T  24346785 cacaagccggttttgtggggttgtgttagacccaaccacgatttttaagatggtatcagagc 24346724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9368631 - 9368692
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||| |||||| |||||    
T  9368631 cacaagccggttttgtggggttgtgttaggcccaaccataatttctaaggtggtatcagagc 9368692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24528576 - 24528637
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||| |||||    
T  24528576 cacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagc 24528637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24270153 - 24270093
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| || |||||||  |||||||||||||||| |||||    
T  24270153 cacaagccggttttgtggggttgtgttaga-ccaaccacgatttttaagatggtatcagagc 24270093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41667041 - 41666980
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  41667041 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 41666980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15480595 - 15480646
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| |||||||    
T  15480595 cacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagatg 15480646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 32908993 - 32908939
Alignment:
Q  8 cggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||| ||| |||||| ||||| ||||||| |||||||||    
T  32908993 cggttttgtggggttgtgttagactcaaccacaatttctaagatgatattagagc 32908939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 37405128 - 37405174
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||    
T  37405128 aagccggttttgtggggttgtattagacccaaccataaattttaaga 37405174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2063782 - 2063721
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| |||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  2063782 cacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 2063721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18333747 - 18333686
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  | || ||||||||||| |||||    
T  18333747 cacaagccggttttgtggggttgtgttaggcccaaccacgaattctaagatggtatcagagc 18333686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21209969 - 21209908
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||||   ||||||||  |||| ||| |||||||||||||    
T  21209969 cacaagccggttttgtggggttgtgttaagcccaaccacgatttctaatatggtattagagc 21209908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 3015610 - 3015562
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  3015610 atggtatcagagcttgtcgaattcaagggccacctacctattcacgcac 3015562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8287837 - 8287880
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataattt 44  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  8287837 cacaagccggttttgtggggttgtgttaggcccaaccacaattt 8287880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19522123 - 19522178
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||||||||||||||||||||| || ||||||||||  |||| ||| |||||||    
T  19522123 cacaagccggttttgtggggttgtatttgacccaaccacgatttctaatatggtat 19522178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25258349 - 25258286
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagctt 64  Q
    |||||| ||||||||||||||||||||  || ||||||  |||| ||||||||||| |||||||    
T  25258349 cacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatcagagctt 25258286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25322139 - 25322076
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagctt 64  Q
    |||||| ||||||||||||||||||||  || ||||||  |||| ||||||||||| |||||||    
T  25322139 cacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatcagagctt 25322076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 6080063 - 6080109
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    ||||||||||||| || ||||||||| | ||||||||||||||||||    
T  6080063 aagccggttttgtaggattgtgttggtctcaaccataatttttaaga 6080109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25258142 - 25258092
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||    
T  25258142 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 25258092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25321932 - 25321882
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||    
T  25321932 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 25321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29434111 - 29434173
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggaccc-aaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||| || ||||| ||| |||||||| || ||||||||||| |||||    
T  29434111 cacaagccggttttgtggggctgggttgggcccaaaccataacttctaagatggtatcagagc 29434173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 60123 - 60172
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||||||||||||||||||| |||| ||||||| || ||||| |||||    
T  60123 cacaagccggttttgtggggttatgttagacccaatcacaatttctaaga 60172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 95314 - 95277
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  95314 cacaagccggttttgtggggttgtgttaggcccaacca 95277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7369760 - 7369797
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  7369760 cacaagccggttttgtggggttgtgttaggcccaacca 7369797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8098353 - 8098414
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||||   ||||||||  |||| ||| ||||||| |||||    
T  8098353 cacaagccggttttgtggggttgtgttaagcccaaccacgatttctaatatggtatcagagc 8098414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15480358 - 15480419
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||| |||||||||||||| |||| | ||||||||  |||| ||||||||||| |||||    
T  15480358 cacaagctggttttgtggggttctgttaggcccaaccacgatttctaagatggtatcagagc 15480419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 15510696 - 15510651
Alignment:
Q  53 gtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    |||| ||||||||||||||| ||||||| |||||| ||||||||||    
T  15510696 gtatcagagcttgtcgaattcaagggtcgcctacctattcacgcac 15510651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18333513 - 18333476
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  18333513 cacaagccggttttgtggggttgtgttaggcccaacca 18333476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24531635 - 24531696
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||| |||||||||||||||||   ||||||||  |||| ||||||||||| |||||    
T  24531635 cacaagccgattttgtggggttgtgttatgcccaaccacgatttctaagatggtatcagagc 24531696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27133041 - 27133004
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  27133041 cacaagccggttttgtggggttgtgttaggcccaacca 27133004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 37656985 - 37656908
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaaggg 78  Q
    |||||| |||||||||||||||  ||| | ||||||||  || | ||| ||||||| ||||||||||||||| |||||    
T  37656985 cacaagtcggttttgtggggttaagttaggcccaaccaccatgtctaacatggtatcagagcttgtcgaattcaaggg 37656908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 37782098 - 37782021
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaaggg 78  Q
    ||||||| |||||||||| |||| ||| | ||||||||  || | ||| ||||||| ||||||||||||||| |||||    
T  37782098 cacaagctggttttgtggagttgagttaggcccaaccaccatgtctaacatggtatcagagcttgtcgaattcaaggg 37782021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41666805 - 41666768
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  41666805 cacaagccggttttgtggggttgtgttaggcccaacca 41666768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 14314654 - 14314710
Alignment:
Q  6 gccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||| | ||||| || || ||||||||||| || |||||    
T  14314654 gccggttttgtggggttgtgttaggcccaatcacaaattttaagatggaatcagagc 14314710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 36878441 - 36878489
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| ||| |||| ||||||||||    
T  36878441 atggtatcagagcttgtcgaattcaagggccacgtacctattcacgcac 36878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 39268137 - 39268185
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||| |||||||    
T  39268137 atggtatcagagcttgttgaattcaagggccacctaccaatccacgcac 39268185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 48243484 - 48243425
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  48243484 acaagccggttttgtggggttgtgttagacccaaccatgatttttaagatggtatcagag 48243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 6782898 - 6782974
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaaggg 78  Q
    |||||||||||||||||||||||||| | | ||||||  |||| ||| ||||||| ||||||||||||||| |||||    
T  6782898 acaagccggttttgtggggttgtgttaggctcaaccacgatttctaacatggtatcagagcttgtcgaattcaaggg 6782974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17202215 - 17202276
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||||| ||||||| |||||    
T  17202215 cacaagccggttttgtggggttgtgttaggcccaaccacgatttttaatatggtatcagagc 17202276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25620172 - 25620233
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  25620172 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 25620233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26239964 - 26239903
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| |||| ||||||||||||||| |||||||||| ||||| ||||||||||| |||||    
T  26239964 cacaagtcggtattgtggggttgtgttagacccaaccacaatttctaagatggtatcagagc 26239903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34027429 - 34027490
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| |||||||||||||    
T  34027429 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtattagagc 34027490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 6751699 - 6751651
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  6751699 atggtatcagagcttgtcgaattcaagggtcacctacctattcacgcac 6751651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 40121971 - 40121911
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  40121971 acaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 40121911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31257315 - 31257252
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagctt 64  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||||    
T  31257315 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagctt 31257252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3038132 - 3038082
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| ||||||    
T  3038132 cacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagat 3038082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 40746304 - 40746362
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||||||||| | |||||||| ||||| ||| |||||||||||||    
T  40746304 aagccgattttgtggggttgtgttaggcccaaccacaatttctaatatggtattagagc 40746362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11211727 - 11211690
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  11211727 cacaagccggttttgtggggttgtgttgggcccaacca 11211690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48417563 - 48417502
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| || |||||||||||||||||| | |||||||| ||||| | |||||||||||||||    
T  48417563 cacaaaccagttttgtggggttgtgttaggcccaaccacaatttcttagatggtattagagc 48417502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 258544 - 258592
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  258544 atggtatcagagcttgtcgaattcaagggccacctaccgattcacgcac 258592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 21861331 - 21861391
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||| ||||||| | ||||||||  |||| ||||||||||| |||||    
T  21861331 acaagccggttttgtgggattgtgttaggcccaaccaccatttctaagatggtatcagagc 21861391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 23821524 - 23821476
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    |||||||||||| |||||||||| |||||| ||||||| ||||||||||    
T  23821524 atggtattagagtttgtcgaattcaagggttacctacctattcacgcac 23821476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 29469642 - 29469702
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  29469642 acaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 29469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30727403 - 30727343
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    ||||||||||||||||| ||||| ||| | ||| |||| ||||||||||||||||| ||||    
T  30727403 cacaagccggttttgtgaggttgagttagtcccgaccagaatttttaagatggtatcagag 30727343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2544495 - 2544440
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||| |||||||||||||||||||| | ||||||||  |||||||| |||||||    
T  2544495 cacaagtcggttttgtggggttgtgttaggcccaaccacgatttttaatatggtat 2544440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 5266225 - 5266272
Alignment:
Q  51 tggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    |||||| ||||| ||||||||| |||||||||||||| ||||||||||    
T  5266225 tggtatcagagcctgtcgaattcaagggtcacctaccgattcacgcac 5266272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 23796222 - 23796175
Alignment:
Q  11 ttttgtggggttgtgttggacccaaccataatttttaagatggtatta 58  Q
    ||||||||||||||||| | | ||||||| ||||||||||||||||||    
T  23796222 ttttgtggggttgtgttaggctcaaccatgatttttaagatggtatta 23796175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21055001 - 21054951
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||    
T  21055001 cacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagat 21054951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36993122 - 36993072
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||| ||||||    
T  36993122 cacaagctggttttgtggggttgtgttaggcccaaccatgatttctaagat 36993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23796071 - 23796010
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||| |||| ||||| |||||| | | ||||||| |||||||||||||||| |||||    
T  23796071 cacaagccgattttatggggatgtgttaggctcaaccatgatttttaagatggtatcagagc 23796010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26029009 - 26028968
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataat 42  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    
T  26029009 cacaagccgattttgtgaggttgtgttagacccaaccataat 26028968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33996359 - 33996298
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||| |||||||| | ||||||||  |||| ||||||||||| |||||    
T  33996359 cacaagtcggttttgtggagttgtgttaggcccaaccacgatttctaagatggtatcagagc 33996298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48243109 - 48243072
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  48243109 cacaagccggttttgtggggttgtgttaggcccaacca 48243072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 1596631 - 1596690
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||| ||||||||||||| | || ||||| ||||| ||||||||||| |||||    
T  1596631 acaagccggttt-gtggggttgtgttaggcctaaccacaatttctaagatggtatcagagc 1596690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 6813272 - 6813224
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||  ||||||||||    
T  6813272 atggtatcagagcttgtcgaattcaagggccacctacatattcacgcac 6813224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 31485706 - 31485646
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||  |||||||| | || ||||| ||||| ||||||||||| |||||    
T  31485706 acaagccggttttgtgaagttgtgttaggcctaaccacaatttctaagatggtataagagc 31485646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33834454 - 33834490
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacc 37  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  33834454 cacaagccggttttgtgggtttgtgttagacccaacc 33834490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 400613 - 400528
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaagggtcacctac 86  Q
    ||||||||||||||||| |||||||||   | |||||| ||||| |||  |||||| ||||||||||||||| |||||||||||||    
T  400613 cacaagccggttttgtgaggttgtgttaagctcaaccacaatttctaacctggtatcagagcttgtcgaattcaagggtcacctac 400528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 21498390 - 21498467
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaaggg 78  Q
    |||||||||||||||||||||| |||| | ||||||||  |||| ||| ||||||| ||||||||||||||| |||||    
T  21498390 cacaagccggttttgtggggttatgttaggcccaaccacgatttctaatatggtatcagagcttgtcgaattcaaggg 21498467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35609759 - 35609698
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| |||||    
T  35609759 cacaagccggttttgtggggttgtgtaagacccaaccatgatttctaagatggtatcagagc 35609698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22231356 - 22231295
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  22231356 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 22231295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 52559603 - 52559664
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| |||||| |||| |||||    
T  52559603 cacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatagtatcagagc 52559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11036559 - 11036507
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatgg 53  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||    
T  11036559 cacaagccggttttgcggggttgtgttagacccaaccacaatttctaagatgg 11036507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 22445489 - 22445549
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| |||||||||||||||||||| |||||||||| || || ||||||||||| |||||    
T  22445489 acaagtcggttttgtggggttgtgttagacccaaccacaaattctaagatggtatcagagc 22445549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 37836117 - 37836171
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||||||||||||||||||||||| | || ||||| ||||| |||||||||||    
T  37836117 acaagccggttttgtggggttgtgttaggcctaaccacaatttctaagatggtat 37836171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 50543378 - 50543316
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagct 63  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||| ||| ||||||    
T  50543378 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatgttatcagagct 50543316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 53828568 - 53828510
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||||||||| | |||||||| ||||| ||||||||||| |||||    
T  53828568 aagccgattttgtggggttgtgttaggcccaaccacaatttctaagatggtatcagagc 53828510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1518200 - 1518261
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | || |||||  |||| ||||||||||| |||||    
T  1518200 cacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagatggtatcagagc 1518261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11036794 - 11036733
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||| || |||||||||||||| | || ||||| ||||||||||||||||| |||||    
T  11036794 cacaagccgattgtgtggggttgtgttaggcctaaccacaatttttaagatggtatcagagc 11036733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14783235 - 14783174
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  14783235 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 14783174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25052888 - 25052949
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  25052888 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaacatggtatcagagc 25052949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35788695 - 35788756
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||| |||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  35788695 cacaagccggttttatggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 35788756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 4645679 - 4645739
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||| |||||| |||| |||||    
T  4645679 acaagccggttttgtgggattgtgttagactcaaccatgatttataagatagtatcagagc 4645739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 14945009 - 14945057
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||| ||||||||| |||||||||||||| ||||||||||    
T  14945009 atggtatcagagcatgtcgaattcaagggtcacctaccgattcacgcac 14945057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 17077133 - 17077085
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  17077133 atggtatcagagcttgtcgaattcaagggccacctacctattcacgcac 17077085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 28245903 - 28245951
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  28245903 atggtatcagagcttgtcgaattcaagggccacctacctattcacgcac 28245951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 40716668 - 40716608
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||| |||||||||||||||| | |||||||||  ||| ||||||||||| |||||    
T  40716668 acaagccggatttgtggggttgtgttaggcccaaccatggtttctaagatggtatcagagc 40716608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 49380870 - 49380822
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||||||||| | |||||| ||||||||||    
T  49380870 atggtatcagagcttgtcgaatttaagggccgcctacctattcacgcac 49380822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5398524 - 5398473
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    ||||||||||||||||||||||||||| |  |||||||| |||| |||||||    
T  5398524 cacaagccggttttgtggggttgtgttaggtccaaccatgatttctaagatg 5398473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 40717482 - 40717428
Alignment:
Q  8 cggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  40717482 cggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 40717428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4464331 - 4464392
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||| |||||||||||| |||| ||||||||||  | || ||||||||||| |||||    
T  4464331 cacaagccgattttgtggggttttgttagacccaaccacgaattctaagatggtatcagagc 4464392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5398260 - 5398223
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  5398260 cacaagccggttttgtggggttgtgttaggcccaacca 5398223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6218240 - 6218301
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||| |||||||| ||| ||||||  |||| ||||||||||| |||||    
T  6218240 cacaagacggttttgtggagttgtgttagacacaaccacgatttctaagatggtatcagagc 6218301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7926364 - 7926425
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||| |||||| | ||||||||  ||||  |||||||||| |||||    
T  7926364 cacaagccggttttgtggggctgtgttaggcccaaccaagatttcgaagatggtatcagagc 7926425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 12869304 - 12869251
Alignment:
Q  8 cggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||||| | ||||||||  |||| ||||||||||| ||||    
T  12869304 cggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagag 12869251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21498831 - 21498868
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  21498831 cacaagccggttttgtggggttgtgttaggcccaacca 21498868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21750090 - 21750045
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataattttt 46  Q
    |||||||||||||||||||||| |||| ||| |||||| |||||||    
T  21750090 cacaagccggttttgtggggttatgttagactcaaccacaattttt 21750045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22845495 - 22845458
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  22845495 cacaagccggttttgtggggttgtgttaggcccaacca 22845458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22863510 - 22863547
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  22863510 cacaagccggttttgtggggttgtgttaggcccaacca 22863547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28073229 - 28073180
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    ||||||| ||||||||||||||||||| | |||||||| ||||| |||||    
T  28073229 cacaagctggttttgtggggttgtgttaggcccaaccacaatttctaaga 28073180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35788930 - 35788967
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  35788930 cacaagccggttttgtggggttgtgttaggcccaacca 35788967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 50543615 - 50543554
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||| |||||||| | ||||||||  |||| ||||||| ||| |||||    
T  50543615 cacaagccggttttgtggagttgtgttaggcccaaccacgatttctaagatgatatcagagc 50543554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 2516239 - 2516287
Alignment:
Q  5 agccggttttgtggggttgtgttggacccaaccataatttttaagatgg 53  Q
    ||||||||||||||||||||||| |  ||||||| ||||| ||||||||    
T  2516239 agccggttttgtggggttgtgttaggtccaaccacaatttctaagatgg 2516287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 10390464 - 10390417
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  10390464 atggtatcagagcttgtcgaattcaaggg-cacctacccattcacgcac 10390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 17111607 - 17111659
Alignment:
Q  9 ggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    ||||||||||||||||||| | ||||||||  |||| ||||||||||| ||||    
T  17111607 ggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagag 17111659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 32002366 - 32002414
Alignment:
Q  8 cggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||||||| |||||| || ||||||| || |||||||||||||||||    
T  32002366 cggttttgtgaggttgtattagacccaaacacaatttttaagatggtat 32002414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 35485271 - 35485323
Alignment:
Q  9 ggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    ||||||||||||||||||| |||||||| | ||  | ||||||||||||||||    
T  35485271 ggttttgtggggttgtgttagacccaactacaaaatctaagatggtattagag 35485323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35819176 - 35819124
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatgg 53  Q
    |||||||| |||||||| ||||||||| | ||||||||  |||||||||||||    
T  35819176 cacaagccagttttgtgaggttgtgttaggcccaaccacgatttttaagatgg 35819124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39269367 - 39269464
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||||||||||| ||| ||||||| | || ||| |  |||||||||||||||| ||||  ||||||||| ||||| |||||||| ||||||||||    
T  39269367 cacaagccggttttgagggattgtgttaggcctaactacgatttttaagatggtatcagagtctgtcgaattcaagggccacctaccgattcacgcac 39269464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1723124 - 1723063
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  1723124 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 1723063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45139019 - 45138958
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||  ||||||||||  |||| ||||||||||| |||||    
T  45139019 cacaagccggttttgtggggttgtgtaagacccaaccacgatttctaagatggtatcagagc 45138958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54368552 - 54368613
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||| |||||||||||| ||||||||||  |||| ||||||||||| |||||    
T  54368552 cacaagccggttttatggggttgtgttagacccaaccacgatttctaagatggtatcagagc 54368613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54567928 - 54567989
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  54567928 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 54567989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12930176 - 12930121
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| |||||||||||    
T  12930176 cacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtat 12930121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20327897 - 20327842
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| ||| |||||||    
T  20327897 cacaagccggttttgtggggttgtgttaggcccaaccatgatttctaatatggtat 20327842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22729136 - 22729191
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||| ||||||||| | |||||||| ||||| |||||||||||    
T  22729136 cacaagccggttttgtgaggttgtgttaggcccaaccacaatttctaagatggtat 22729191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8019004 - 8019054
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| ||||||    
T  8019004 cacaagccggttttgtggggttgtgttaggcccaaccacaatttctaagat 8019054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 4155363 - 4155420
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||||||||| | ||||||||  |||| ||||||||||| ||||    
T  4155363 aagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagag 4155420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11589821 - 11589882
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  11589821 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 11589882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16239627 - 16239688
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||| ||||||| | ||||||||  |||| ||||||||||| |||||    
T  16239627 cacaagccggttttgtgggattgtgttaggcccaaccacgatttctaagatggtatcagagc 16239688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20303433 - 20303372
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| |  ||||||| ||||| ||| ||||||| |||||    
T  20303433 cacaagccggttttgtggggttgtgttaggtccaaccacaatttctaatatggtatcagagc 20303372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23708272 - 23708211
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| | ||||||| |  |||| || |||||||||||||||||||||||    
T  23708272 cacaagccggttttgtgagattgtgttaggtccaatcacaatttttaagatggtattagagc 23708211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23726728 - 23726667
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| | ||||||| |  |||| || |||||||||||||||||||||||    
T  23726728 cacaagccggttttgtgagattgtgttaggtccaatcacaatttttaagatggtattagagc 23726667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23745184 - 23745123
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| | ||||||| |  |||| || |||||||||||||||||||||||    
T  23745184 cacaagccggttttgtgagattgtgttaggtccaatcacaatttttaagatggtattagagc 23745123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24063709 - 24063648
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| | ||||||| |  |||| || |||||||||||||||||||||||    
T  24063709 cacaagccggttttgtgagattgtgttaggtccaatcacaatttttaagatggtattagagc 24063648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34610597 - 34610646
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||| |||||||||||||||||||| |||||||||| ||||| |||||    
T  34610597 cacaagtcggttttgtggggttgtgttagacccaaccacaatttctaaga 34610646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45828055 - 45828116
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| ||||||||| | ||| |||| ||||| ||||||||||| |||||    
T  45828055 cacaagccggttttgtgaggttgtgttaggccctaccacaatttctaagatggtatcagagc 45828116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49629641 - 49629702
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| ||||||||||||||||||||| |||||||  |  |||||||| |||||||||||||    
T  49629641 cacaaaccggttttgtggggttgtgttagacccaattaccatttttaaaatggtattagagc 49629702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 40926568 - 40926616
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||||||||| |||||| || |||||||||||||| ||||||||||    
T  40926568 atggtattagagcctgtcgatttcaagggtcacctaccgattcacgcac 40926616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13574969 - 13574914
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||||| |||||||||||||||||| | |||||||| ||||| ||| |||||||    
T  13574969 cacaagccagttttgtggggttgtgttaggcccaaccacaatttctaatatggtat 13574914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13741149 - 13741106
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataattt 44  Q
    |||||||||||||| |||||||||||| |||||||||| |||||    
T  13741149 cacaagccggttttttggggttgtgttagacccaaccacaattt 13741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20327662 - 20327615
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaa 48  Q
    ||||||||||||||||||||||||||| | ||||||||  ||||||||    
T  20327662 cacaagccggttttgtggggttgtgttaggcccaaccacgatttttaa 20327615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26272372 - 26272321
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    ||||||| | ||||||||||||||||| |||||||||| ||||| |||||||    
T  26272372 cacaagctgattttgtggggttgtgttagacccaaccacaatttctaagatg 26272321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 21833399 - 21833461
Alignment:
Q  16 tggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcgaatttaaggg 78  Q
    |||||||||||| | ||||||||  |||| ||| ||||||| ||||||||||||||| |||||    
T  21833399 tggggttgtgttaggcccaaccacgatttctaacatggtatcagagcttgtcgaattaaaggg 21833461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24866233 - 24866283
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||    
T  24866233 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagat 24866283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 33909821 - 33909779
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattc 92  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  33909821 atggtattagagcttgtcgaattcaagggccacctacctattc 33909779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13574732 - 13574695
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  13574732 cacaagccggttttgtggggttgtgttaggcccaacca 13574695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17638270 - 17638331
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||| ||||||| ||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  17638270 cacaagctggttttgaggggttgtgttaggcccaaccacgatttctaagatggtataagagc 17638331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23691472 - 23691411
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||| |||||| | ||||||| |  |||| || |||||||||||||||||||||||    
T  23691472 cacaagccggatttgtgagattgtgttaggtccaatcacaatttttaagatggtattagagc 23691411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29575938 - 29575877
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||  || ||||||||| || ||||||| ||||||||||||||||| |||||    
T  29575938 cacaagtcggtttgctgaggttgtgttagatccaaccacaatttttaagatggtatcagagc 29575877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33640081 - 33640142
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||| ||||||| | ||||| || ||||| ||||||| ||| |||||    
T  33640081 cacaagccggttttgtgggattgtgttaggcccaatcacaatttctaagatgatatcagagc 33640142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 35015395 - 35015440
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacg 95  Q
    ||||||| ||||||||||||||| ||||| |||||||| |||||||    
T  35015395 atggtatcagagcttgtcgaattcaagggccacctaccgattcacg 35015440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35038242 - 35038205
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  35038242 cacaagccggttttgtggggttgtgttaggcccaacca 35038205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50052587 - 50052550
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  50052587 cacaagccggttttgtggggttgtgttaggcccaacca 50052550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16926997 - 16926937
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||||||||||||   | ||||||  |||| ||||||||||| ||||    
T  16926997 cacaagccggttttgtggggttgtgttaagctcaaccacgatttctaagatggtatcagag 16926937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 26927021 - 26927069
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||| ||||| ||| |||||||||||||| ||||||||||    
T  26927021 atggtatcagagcctgtcggattcaagggtcacctaccgattcacgcac 26927069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 32034205 - 32034253
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| |||||||||||| || ||||| |||||||| ||||||||||    
T  32034205 atggtatcagagcttgtcgatttcaagggccacctaccgattcacgcac 32034253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45828282 - 45828330
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaag 49  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||| ||||    
T  45828282 cacaagcaggttttgtggggttgtgttaggcccaaccatgatttctaag 45828330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2859675 - 2859614
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| ||||||||| | ||||||||| |||| |||||||||||||||||    
T  2859675 cacaagccggttttgtgaggttgtgttagccccaaccatcatttctaagatggtattagagc 2859614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17452876 - 17452815
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | || |||||  |||| |||||||||||||||||    
T  17452876 cacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagatggtattagagc 17452815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33156769 - 33156830
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| ||||||||||||||||||||| | ||||||||  |||| |||||||||||||||||    
T  33156769 cacaaaccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtattagagc 33156830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4113054 - 4112999
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| |||||||||||    
T  4113054 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtat 4112999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 35772067 - 35772126
Alignment:
Q  3 caagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  35772067 caagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 35772126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 11234255 - 11234313
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||| || | |||||||| || || |||||||||||||||||    
T  11234255 aagccggttttgtggggttgtattaggcccaaccacaaattataagatggtattagagc 11234313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25145768 - 25145707
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||| |||||||||||||||| | ||||||||| |||| ||||||| ||| |||||    
T  25145768 cacaagccggatttgtggggttgtgttaggcccaaccatgatttctaagatgatatcagagc 25145707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 40316095 - 40316030
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcga 69  Q
    |||||||||||||| ||||||||| || |||||||  |||| ||| ||||||||||||||| ||||    
T  40316095 aagccggttttgtgaggttgtgttagatccaaccacgatttctaacatggtattagagcttatcga 40316030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 52650819 - 52650770
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    ||||||| ||||||||||||||||||| | |||||||||||||| |||||    
T  52650819 cacaagctggttttgtggggttgtgttaggcccaaccataatttctaaga 52650770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3169802 - 3169862
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| ||||    
T  3169802 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagag 3169862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 29265990 - 29266050
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| ||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  29265990 acaagctggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 29266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35892327 - 35892387
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    ||||| |||||||||||||||| |||| | | |||||||||||| ||||||||||| ||||    
T  35892327 cacaacccggttttgtggggttctgttaggctcaaccataatttctaagatggtatcagag 35892387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 50882700 - 50882768
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttgtcga 69  Q
    |||||| ||||||||||| ||||| || | ||||||||  |||||||||||||||| ||||||| ||||    
T  50882700 cacaagtcggttttgtggagttgtattcggcccaaccaagatttttaagatggtataagagcttatcga 50882768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 51460489 - 51460429
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||| |||||||||||||||||| | |||||||||||||| ||| ||| ||| |||||    
T  51460489 acaagccagttttgtggggttgtgttaggcccaaccataatttctaaaatgatatcagagc 51460429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 6238327 - 6238276
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcacaaa 101  Q
    ||||||| ||||| ||||||||| ||||| |||||||| |||||||||||||    
T  6238327 atggtatcagagcctgtcgaattcaagggccacctaccgattcacgcacaaa 6238276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25255347 - 25255398
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| |||||||    
T  25255347 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatg 25255398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 51589028 - 51589083
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| |||||||    
T  51589028 cacaagccggttttgtggggttgtgttaggcccaaccaccatttctaatatggtat 51589083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51589262 - 51589325
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagctt 64  Q
    ||||||||||||||||||||||||||| | || |||||  |||| ||| ||||||| |||||||    
T  51589262 cacaagccggttttgtggggttgtgttaggcctaaccacgatttctaatatggtatcagagctt 51589325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3170037 - 3170071
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaa 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  3170037 cacaagccggttttgtggggttgtgttagacccaa 3170071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9146912 - 9146851
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||| |||||| |   | |||||||||||| ||||||||||| |||||    
T  9146912 cacaagccggttttgtggagttgtgctacgctcaaccataatttctaagatggtatcagagc 9146851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11525033 - 11525094
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| ||||||||||| ||||||||| | |||| ||| ||||| ||||||||||| |||||    
T  11525033 cacaatccggttttgtgaggttgtgttaggcccatccacaatttctaagatggtatcagagc 11525094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 16162979 - 16163020
Alignment:
Q  11 ttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  16162979 ttttgtggggttgtgttagactcaaccacaatttttaagatg 16163020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17452727 - 17452690
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  17452727 cacaagccggttttgtggggttgtgttaggcccaacca 17452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 22100138 - 22100179
Alignment:
Q  20 gttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||| ||||||||||| |||||||||||||| ||||    
T  22100138 gttgtgttgggcccaaccataacttttaagatggtatcagag 22100179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38668161 - 38668222
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||  ||||||||||||||||| | ||||| || ||||| ||||||||||| |||||    
T  38668161 cacaagccaattttgtggggttgtgttaggcccaatcacaatttctaagatggtatcagagc 38668222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40079188 - 40079225
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  40079188 cacaagccggttttgtggggttgtgttaggcccaacca 40079225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51589842 - 51589903
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||| ||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  51589842 cacaagccgattttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 51589903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2997250 - 2997202
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||||||||||| ||||||| || || |||||||| ||||||||||    
T  2997250 atggtattagagcttctcgaattcaaaggccacctaccgattcacgcac 2997202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 11590534 - 11590582
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| | |||||| ||||||||||    
T  11590534 atggtatcagagcttgtcgaattcaagggccgcctacctattcacgcac 11590582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 25137348 - 25137308
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataattt 44  Q
    |||||||||||||||||||||||| | |||||||| |||||    
T  25137348 aagccggttttgtggggttgtgttaggcccaaccacaattt 25137308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 29413256 - 29413304
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| || |||||||    
T  29413256 atggtatcagagcttgtcgaattcaagggccacctacctatccacgcac 29413304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 38871144 - 38871096
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| || |||||||    
T  38871144 atggtatcagagcttgtcgaattcaagggccacctacctatccacgcac 38871096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 5692 - 5752
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| ||||||||||  |||| ||||||||||| |||||    
T  5692 acaagccggttttgtggggttgtgttagacccaaccacgatttctaagatggtatcagagc 5752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4868861 - 4868800
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  4868861 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 4868800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 5608935 - 5608988
Alignment:
Q  11 ttttgtggggttgtgttggacccaaccataatttttaagatggtattagagctt 64  Q
    ||||||||||||||||| |||  ||||||||||||||||||| |||||||||||    
T  5608935 ttttgtggggttgtgttagacataaccataatttttaagatgatattagagctt 5608988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 13353238 - 13353298
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  13353238 acaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 13353298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30256848 - 30256912
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagcttg 65  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| ||||||||    
T  30256848 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcttg 30256912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 33796363 - 33796423
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  33796363 acaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 33796423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33494575 - 33494630
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| |||||||||||    
T  33494575 cacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtat 33494630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 6542988 - 6542930
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||| ||||||||||  ||||  |||||||||| |||||    
T  6542988 aagccggttttgtggggttgtgttagacccaaccacgatttcaaagatggtatcagagc 6542930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8026425 - 8026486
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  8026425 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 8026486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9705056 - 9705117
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||| |||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  9705056 cacaagtcggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 9705117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9705290 - 9705327
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9705290 cacaagccggttttgtggggttgtgttagacccaacca 9705327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 11316958 - 11317006
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||    
T  11316958 atggtatcagagcttgtcgaattcaagggccacctacctattcacgcac 11317006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24554153 - 24554213
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagag 61  Q
    |||||||||||||||||| |||||||| | | |||||||||||| ||| ||||||| ||||    
T  24554153 cacaagccggttttgtggagttgtgttagtctcaaccataatttctaacatggtatcagag 24554213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3680048 - 3680103
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtat 56  Q
    |||||| || ||||||||||||||||| | |||||||| ||||| |||||||||||    
T  3680048 cacaagtcgattttgtggggttgtgttaggcccaaccacaatttctaagatggtat 3680103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 13692365 - 13692330
Alignment:
Q  47 aagatggtattagagcttgtcgaatttaagggtcac 82  Q
    |||||||||||||||||||||||||| |||||||||    
T  13692365 aagatggtattagagcttgtcgaattcaagggtcac 13692330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 24558695 - 24558746
Alignment:
Q  47 aagatggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    |||||||||| ||||||||||||||| | ||| |||||||| ||||||||||    
T  24558695 aagatggtatcagagcttgtcgaattcatgggccacctaccgattcacgcac 24558746  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27656494 - 27656537
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataattt 44  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  27656494 cacaagccggttttgtggggttgtgttaggcccaaccacaattt 27656537  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5648720 - 5648670
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    ||||||||||||||||| ||||||||| |  ||||||||||||| ||||||    
T  5648720 cacaagccggttttgtgaggttgtgttaggtccaaccataatttctaagat 5648670  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6400668 - 6400618
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagat 51  Q
    |||||| |||||||||||||||||||| ||||||||||   ||||||||||    
T  6400668 cacaagtcggttttgtggggttgtgttagacccaaccacggtttttaagat 6400618  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4868625 - 4868588
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  4868625 cacaagccggttttgtggggttgtgttaggcccaacca 4868588  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8026640 - 8026677
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaacca 38  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  8026640 cacaagccggttttgtggggttgtgttaggcccaacca 8026677  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12330227 - 12330166
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||| ||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  12330227 cacaagccggttttgtgaggttgtgttaggcccaaccacgatttctaatatggtatcagagc 12330166  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13740952 - 13741001
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||| |||||||||||||||||||| | |||||||| ||||| |||||    
T  13740952 cacaagtcggttttgtggggttgtgttaggcccaaccacaatttctaaga 13741001  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13746452 - 13746501
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||||| |||||||||||||||||||| | |||||||| ||||| |||||    
T  13746452 cacaagtcggttttgtggggttgtgttaggcccaaccacaatttctaaga 13746501  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30256614 - 30256675
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| ||||||||||||||||||||| | ||||||||  |||| |||| |||||| |||||    
T  30256614 cacaaaccggttttgtggggttgtgttaggcccaaccacgatttctaaggtggtatcagagc 30256675  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 2904909 - 2904957
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||||||| ||||||||||| ||||||||  ||||||| |||||||    
T  2904909 atggtattagaacttgtcgaattcaagggtcatttaccaatccacgcac 2904957  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 11721944 - 11721992
Alignment:
Q  4 aagccggttttgtggggttgtgttggacccaaccataatttttaagatg 52  Q
    |||||||||||||||||||||||| | ||||||||  |||| |||||||    
T  11721944 aagccggttttgtggggttgtgttaggcccaaccacgatttctaagatg 11721992  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 16570196 - 16570244
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    ||||| |||||||||||||||||||| | ||||||||| |||| |||||    
T  16570196 acaagtcggttttgtggggttgtgttaggcccaaccatgatttctaaga 16570244  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 19712598 - 19712550
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||| ||||||||||| ||||| |||||||| ||||||||||    
T  19712598 atggtatcagaacttgtcgaattcaagggccacctaccgattcacgcac 19712550  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19712750 - 19712813
Alignment:
Q  1 cacaagccggttttgtggggt--tgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||  |||||| | ||||||||  |||| ||||||||||| |||||    
T  19712750 cacaagccggttttgtggggttgtgtgttaggcccaaccaccatttctaagatggtatcagagc 19712813  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 29742628 - 29742580
Alignment:
Q  50 atggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    ||||||| ||||||||||||||| ||||| ||| |||| ||||||||||    
T  29742628 atggtatcagagcttgtcgaattcaagggccacttacctattcacgcac 29742580  T

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Target: scaffold0519 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 1953 - 2013
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    |||||||||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  1953 acaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 2013  T

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Target: scaffold0519; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 2188 - 2224
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaacca 38  Q
    |||||||||||||||||||||||||| | ||||||||    
T  2188 acaagccggttttgtggggttgtgttaggcccaacca 2224  T

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Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12683 - 12741
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattag 59  Q
    |||||| || ||||||| ||||||||| | |||||||| ||||||||||||||||||||    
T  12683 cacaagtcgattttgtgtggttgtgttaggcccaaccacaatttttaagatggtattag 12741  T

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Target: scaffold0692 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5592 - 5543
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    ||||||||||||||| ||||||||||| | |||||||||||||| |||||    
T  5592 cacaagccggttttgcggggttgtgttaggcccaaccataatttctaaga 5543  T

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Target: scaffold0692; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5802 - 5741
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||| ||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  5802 cacaagccggttttgcggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 5741  T

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Target: scaffold0481 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3519 - 3458
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| ||||||| ||  |||| ||| ||||||| |||||    
T  3519 cacaagccggttttgtggggttgtgttagacccaatcacgatttctaatatggtatcagagc 3458  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14339 - 14400
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||   ||| ||||||||||| |||||    
T  14339 cacaagccggttttgtggggttgtgttaggcccaaccacgttttctaagatggtatcagagc 14400  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 56495 - 56556
Alignment:
Q  1 cacaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||||||||||||||||||||||||| | ||||||||  |||| ||| ||||||| |||||    
T  56495 cacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagc 56556  T

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Target: scaffold0048 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 81879 - 81939
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaagatggtattagagc 62  Q
    ||||| |||||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  81879 acaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 81939  T

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Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 82113 - 82161
Alignment:
Q  2 acaagccggttttgtggggttgtgttggacccaaccataatttttaaga 50  Q
    |||| ||||||||||||||||||||| | |||||||| ||||| |||||    
T  82113 acaaaccggttttgtggggttgtgttaggcccaaccacaatttctaaga 82161  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 121432 - 121487
Alignment:
Q  43 ttttaagatggtattagagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    |||||| ||||||| ||||||||||||||| ||||| |||||||| ||||| ||||    
T  121432 ttttaacatggtatcagagcttgtcgaattcaagggccacctaccgattcatgcac 121487  T

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Target: scaffold1138 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 2060 - 2020
Alignment:
Q  58 agagcttgtcgaatttaagggtcacctaccaattcacgcac 98  Q
    |||| |||||||||| |||||||||||||| ||||||||||    
T  2060 agagtttgtcgaattcaagggtcacctaccgattcacgcac 2020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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