View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10025_low_7 (Length: 294)
Name: NF10025_low_7
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10025_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 45539912 - 45539643
Alignment:
| Q |
9 |
agcagagaggggactattttaacgttggagactattttgaccaataaagtgcacaatcactattttgaattttttggaccaaaatgactattcccctata |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45539912 |
agcatagaggggactattttaacgttggagactattttgatcaataaagtgcacaatcactattttgaattttttggaccaaaatgactattcccctata |
45539813 |
T |
|
| Q |
109 |
cattttttgtagcagttttcagttgtattttatttttgcctaaattgctcttttggtcccttaacattaggcccttttgcaaaagtgacgcccccgctga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45539812 |
cattttttgtagcagttttcagttgtattttatttttgcctaaattgctcttttggtcccttaacattaggcccttttgcaaaagtgacgcccccactga |
45539713 |
T |
|
| Q |
209 |
ttttgaccggctcaacgccggtgttggggaccacaatcaaaggtttgtgtaagtttgagggccaaagttg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45539712 |
ttttgaccggctcaacgccggtgttggggaccacaatcaaaggtttgtgtaagtttgagggccaaagttg |
45539643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 38989871 - 38989918
Alignment:
| Q |
20 |
gactattttaacgttggagactattttgaccaataaagtgcacaatca |
67 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
38989871 |
gactattttaacgtcagagactattttgaccaacgaagtgcacaatca |
38989918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 11358576 - 11358527
Alignment:
| Q |
18 |
gggactattttaacgttggagactattttgaccaataaagtgcacaatca |
67 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
11358576 |
gggactattttaacgtcagagactattttgactaacgaagtgcacaatca |
11358527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 10219660 - 10219616
Alignment:
| Q |
23 |
tattttaacgttggagactattttgaccaataaagtgcacaatca |
67 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
10219660 |
tattttaacgtcagagactattttgactaacaaagtgcacaatca |
10219616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 10219781 - 10219825
Alignment:
| Q |
23 |
tattttaacgttggagactattttgaccaataaagtgcacaatca |
67 |
Q |
| |
|
||||||| ||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
10219781 |
tattttagcgtcgaagactattttgactaataaagtgcacaatca |
10219825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 12825742 - 12825782
Alignment:
| Q |
133 |
gtattttatttttgcctaaattgctcttttggtcccttaac |
173 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
12825742 |
gtattttatttttggctaaaatactcttttggtcccttaac |
12825782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 20966199 - 20966243
Alignment:
| Q |
23 |
tattttaacgttggagactattttgaccaataaagtgcacaatca |
67 |
Q |
| |
|
|||| ||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
20966199 |
tattctaatgttggagactattttgactaacaaagtgcacaatca |
20966243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 30256160 - 30256116
Alignment:
| Q |
21 |
actattttaacgttggagactattttgaccaataaagtgcacaat |
65 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||| |||||||| |
|
|
| T |
30256160 |
actattttaacgttggggactattttaactaataaaatgcacaat |
30256116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University