View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10025_low_9 (Length: 251)
Name: NF10025_low_9
Description: NF10025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10025_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 3427615 - 3427481
Alignment:
| Q |
1 |
cagcacatcaccacaacaccaacatctctattttaggtcatctcnnnnnnnccttcttttctataaactcccaatcttggctcaattttgattactatat |
100 |
Q |
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| T |
3427615 |
cagcacatcaccacaacaccaacatctctatgttaggtcatctctttttttccttcttttctataaactcccaattttggctcaattttgattactatat |
3427516 |
T |
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| Q |
101 |
tgaaattgaaattgattttagcttttaagttttgg |
135 |
Q |
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| T |
3427515 |
tgaaattgaaattgattttagcttttaggttttgg |
3427481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 3427491 - 3427405
Alignment:
| Q |
147 |
ttaggttttggaattttgttttattacaactaattttatgagtgtaaccactattttcatgtatgtactccaaaatatgttattatagctct |
238 |
Q |
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| T |
3427491 |
ttaggttttggaattttgttttattacaactaattttataagtgtaaccacta---aca-ctat-tactccaaaatatgttattatagctct |
3427405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 8340296 - 8340356
Alignment:
| Q |
81 |
ctcaattttgattactatattgaaattgaaattgattttagcttttaagttttggctaaaa |
141 |
Q |
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| T |
8340296 |
ctcaattttggttactatattaaaattgaaattgactttagcttttaggttttggctaaaa |
8340356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 47509348 - 47509200
Alignment:
| Q |
17 |
caccaacatctctattttaggtcatctcnnnnnnnccttcttttctataaactcccaatcttggctcaattttgattactatattgaaattgaaattgat |
116 |
Q |
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| T |
47509348 |
caccaacatctctattttaggtcatctcactttttccttcttttttataaactcccaattttggctctattttgattactatattaaaattgaaatt-at |
47509250 |
T |
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| Q |
117 |
tttagcttttaagttttggctaaaatatcattaggttttggaattttgtt |
166 |
Q |
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| T |
47509249 |
tttagattttaggttttcgctataatatcattagggtttggaattttgtt |
47509200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 42884732 - 42884797
Alignment:
| Q |
92 |
ttactatattgaaattgaaattgattttagcttttaagttttggctaaaatatcattaggttttgg |
157 |
Q |
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| T |
42884732 |
ttactacactgaaattgaaattgattttagcttttaggtttttgctacaacatcattaggttttgg |
42884797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 23884745 - 23884792
Alignment:
| Q |
156 |
ggaattttgttttattacaactaattttatgagtgtaaccactattttc |
204 |
Q |
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| T |
23884745 |
ggaattttgttttatcacaactaattt-atgagtgtaaccactattttc |
23884792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 34404259 - 34404312
Alignment:
| Q |
85 |
attttgattactatattgaaattgaaattgattttagcttttaagttttggcta |
138 |
Q |
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| T |
34404259 |
attttggttactatatttaaattgaaattgattttagcttttagattttggcta |
34404312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 7871222 - 7871188
Alignment:
| Q |
101 |
tgaaattgaaattgattttagcttttaagttttgg |
135 |
Q |
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| T |
7871222 |
tgaaattgaaattgattttagcttttaggttttgg |
7871188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 42372832 - 42372783
Alignment:
| Q |
78 |
tggctcaattttgattactatattgaaattgaaattgattttagctttta |
127 |
Q |
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| T |
42372832 |
tggctcaattttggtcacaatactgaaattgaaactgattttagctttta |
42372783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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