View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10026_high_1 (Length: 890)
Name: NF10026_high_1
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 643; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 193 - 875
Target Start/End: Complemental strand, 15043193 - 15042511
Alignment:
| Q |
193 |
atctactgcccccacataaggtcctgacctgtcctcaggccaaccaacataagcctgatacatcccgggagtcatgactgggtaatcgaggtttcctgga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15043193 |
atctactgcccccacataaggtcctgacctgtcctcaggccaaccaacataagcctgatacatcccgggagtcatgaccgggtaatcgaggtttcctgga |
15043094 |
T |
|
| Q |
293 |
tgcacataagcattatgaacagtctggtgggttccatgtttgctccggtaaatgacataattttgattcattatgtaactgttctagtcccggactaact |
392 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
15043093 |
tgcacataagcattatgaacagtctggtggattccatgtttgctccggtaaatgacataattttgagtcattatgtaactattctagtcccgtactaact |
15042994 |
T |
|
| Q |
393 |
gcttgtgctggttctgctcagccatgaaagattggagagaggagaagtcaaaaataccagcactagtgtctgacttatcatcagaagacccatggtagtc |
492 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
15042993 |
gcttgtgctggttctgctcggccatgaaagattggagagaggagaagtcaaaaataccagcactagtgtctgcctcatcatcagaagacccatggtagtc |
15042894 |
T |
|
| Q |
493 |
tgttgttctcttttctctcttaaccaggctagagataaaggtatcatctatagggtgttgaatctcctcatcagctggctcagggatttccacccctttg |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15042893 |
tgttgttctcttttctctcttaaccaggctagagataaaggtatcatctatagggtgttgaatctcctcatcagctggctcagggatttccacccctttg |
15042794 |
T |
|
| Q |
593 |
gatataagtaagctcataatcaaaccagggaaattgaggctagctttggaaccagtggcacacttaagggcaacactttttagttcatttgcaatgagtc |
692 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15042793 |
gatataagtaagctcataatcaaaccagggaaattgaggctagctttggaaccagtggcacacttaagggcaacactttttagttcatttgcaatgagtc |
15042694 |
T |
|
| Q |
693 |
gagcaacatccacttgtgttcccggcataatgcaccagatcaatggggtgaccttcatggtagtgtcggaagtatggcttttaggcaacacattgtgcac |
792 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15042693 |
gagcaacatccacttgtgttccctgcataatgcaccagatcaatggggtgaccttcatggtagtgtcggaagtatggcttttaggcaacacattgtgcac |
15042594 |
T |
|
| Q |
793 |
tataaacttgaacacaacactgacattagcattcatgtcagcatataaagccttgtgagctctcccaacggcactcttgatgt |
875 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15042593 |
tataaacttgaacacaacactgaaattagcattcatgtcagcatataaagccttgtgagctctcccaacggcactcttgatgt |
15042511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 15043325 - 15043253
Alignment:
| Q |
18 |
aacaaccataaaacttaaaacaaagtgatgaaagtaaagtgtggagaaattaaaacccaagtgctcgaagagt |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15043325 |
aacaaccataaaacttaaaacaaagtgatgaaagtaaagtgtcgagaaattaaaacccaagtgctcgaagagt |
15043253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 31882383 - 31882275
Alignment:
| Q |
198 |
ctgcccccacataaggtcctgacctgtcctcaggccaaccaacataagcctgatacatcccgggagtcatgactgggtaatcgaggtttcctggatgcac |
297 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| | || || | ||| ||||| ||| | |||||||||||| |
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| T |
31882383 |
ctgcccccacataaggtcctggtctgtcctcaggccaagcaacaagagcctgatacatctcaggtgttaagaccgggtagtcggaatctcctggatgcac |
31882284 |
T |
|
| Q |
298 |
ataagcatt |
306 |
Q |
| |
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|| |||||| |
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| T |
31882283 |
atgagcatt |
31882275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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