View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10026_high_2 (Length: 811)
Name: NF10026_high_2
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 8188458 - 8187863
Alignment:
| Q |
1 |
ccagcaactcctgaagctctaactcaaagtctgcatcattatcctcatcatcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8188458 |
ccagcaactcctgaagctctaactcaaagtctgcatcattatcctcatcatcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccacc |
8188359 |
T |
|
| Q |
101 |
ctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaacatcatcttcatcatcggtctcttgaagaaaggtctcaagctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8188358 |
ctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaacatcatcttcatcatcagtctcttgaagaaaggtctcaagctca |
8188259 |
T |
|
| Q |
201 |
tcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatcctcagtatctatgtctatcactgggcttcggggtttcgttgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8188258 |
tcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatcctcagtatctatgtctatcactgggcttcggggtttcgttgtgt |
8188159 |
T |
|
| Q |
301 |
tgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttcttctccttatcaatctccaattgagatatcatccctgccgcttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8188158 |
tgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttcttctccttatcaatctccaattgagatatcatacctgccgcttc |
8188059 |
T |
|
| Q |
401 |
taaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcattatccgttatcttttccaaatctatatccatagatggcccacta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8188058 |
taaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcattatccgttatcttttccaaatctatatccatagatggcccacta |
8187959 |
T |
|
| Q |
501 |
tctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatccgaaagtgtttcctttagaaacaaaggattaaagtctgca |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8187958 |
tctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatctgaaagtgtttcctttagaaacaaaggattaaagtctgca |
8187863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University