View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10026_high_5 (Length: 429)
Name: NF10026_high_5
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 45043035 - 45043429
Alignment:
| Q |
15 |
tggagaagcaaaggaaattaatgccaattgatatgctaaccgaaaagggaaattaaatattgtatcaaataagatactaatattattatgagaaaacaat |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043035 |
tggagaggcaaaggaaattaatgccaattgatatgctaaccaaaaagggaaattaaatattgtatcaaataagatactaatattattatgagaaaacaat |
45043134 |
T |
|
| Q |
115 |
atagtagttcaacatccaagctnnnnnnnntccccagataaaagaa-gggatctctaatcaaaattttcctaaaaggggaaataattaaaacgagataaa |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45043135 |
atagtagttcaacatccaagctaaaaaaaatccccagataaaaaaaagggatctctaatcaaaattttcctaaaaggggaaataa----aacgagataaa |
45043230 |
T |
|
| Q |
214 |
agatcatcctactacnnnnnnngtagatctgaagtacggaatggaaaatgcagaaccaaaagttcagataaactataatgtaaaacttatactaatcaat |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043231 |
agatcatcctactacaaaaaaagtagatctgaagtacggaatggaaaatgcagaaccaaaagttcagataaactataatgtaaaacttatactaatcaat |
45043330 |
T |
|
| Q |
314 |
tggtcacataataacacaattgttatttgtatcattgtagtgttggagttgttgatgttgcaattgttctgatgcagatggtggaggcagtgctaaaat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043331 |
tggtcacataataacacaattgttatttgtatcattgtagtgttggagttgttgatgttgcaattgttctgatgcagatggtggaggcagtgctaaaat |
45043429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 238 - 408
Target Start/End: Original strand, 45039737 - 45039907
Alignment:
| Q |
238 |
agatctgaagtacggaatggaaaatgcagaac-caaaagttcagataaactataatgtaaaacttatactaatcaattggtcacataataacacaattgt |
336 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || |||||||||||||| |||| ||||||| |
|
|
| T |
45039737 |
agatctcaagtacgaaatggaaaatgcagaaagcaaaaattcagataagctataatgtaaaacttataccaa-caattggtcacatattaacgcaattgt |
45039835 |
T |
|
| Q |
337 |
tatttgtatcattgtagtgttggagttgttgatgttgcaattgttctgatgcagatggtggaggcagtgcta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
45039836 |
tatttgtatcattgtagtgttggagttgctgatgttccaattgttctggtgctgatggtggaggaagtgcta |
45039907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 45047274 - 45047347
Alignment:
| Q |
276 |
ttcagataaactataatgtaa-aacttatactaatcaattggtcacataataacacaattgttatttgtatcat |
348 |
Q |
| |
|
|||| |||||||||||||| | ||||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
45047274 |
ttcaaataaactataatgttataacttattctaattaattgatcacaaaataacacatctgttatttgtatcat |
45047347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 38346415 - 38346363
Alignment:
| Q |
344 |
atcattgtagtgttggagttgttgatgttgcaattgttctgatgcagatggtg |
396 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
38346415 |
atcatagtagtgttggatttgttgatgttgcatttgttctgaagcagatggtg |
38346363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University