View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10026_high_6 (Length: 364)
Name: NF10026_high_6
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_high_6 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 49520950 - 49520587
Alignment:
| Q |
1 |
tattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattttctgtgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||| ||||||| |||||||| |||||||| ||| ||||| |
|
|
| T |
49520950 |
tattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcattagcaaaattgaagccggagagaggtttgtcgtgtat |
49520851 |
T |
|
| Q |
101 |
attgtcattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggcaaagaaggaccatggagatgatgtatactgaga |
200 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520850 |
gtggtgattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggcaaagaaggaccatggagatgatgtatactgaga |
49520751 |
T |
|
| Q |
201 |
ttgctgatgccataaaaaagaagaacattgaagcacaccctcgtgattatttgacattttattgtcttggtaaaagggagagtaagaaagatggagagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520750 |
ttgctgatgccataaaaaagaagaacattgaagcacaccctcgtgattatttgacattttattgtcttggtaaaagggagagtaagaaagatggagagta |
49520651 |
T |
|
| Q |
301 |
cactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaaagtctagaagattc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520650 |
cactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaaagtctagaagattc |
49520587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 49509804 - 49509598
Alignment:
| Q |
1 |
tattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattttctgtgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49509804 |
tattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattttctgtgtac |
49509705 |
T |
|
| Q |
101 |
attgtcattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggcaaagaaggaccatggagatgatgtatactgaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
49509704 |
attgtcattccaatgtggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggcaaagaaggactatggagatgatgtattctgaca |
49509605 |
T |
|
| Q |
201 |
ttgctga |
207 |
Q |
| |
|
||||||| |
|
|
| T |
49509604 |
ttgctga |
49509598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 49509482 - 49509441
Alignment:
| Q |
323 |
cctgacagtgattatcatagagcacaaaagtctagaagattc |
364 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
49509482 |
cctgacagtgattatagtagagcacaaaattctagaagattc |
49509441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 44662779 - 44662954
Alignment:
| Q |
17 |
attggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattttctgtgtacattgtcattccaatgt |
116 |
Q |
| |
|
|||||||||||||| || || ||||||||| | || || |||||||||||||||||||||||||| || ||||| ||||||| |||| |||| |||| |
|
|
| T |
44662779 |
attggtgctttgcatctgatcccaaaagagctttcacttaagattgttagcaagattgaagctggggaaagattcactgtgtatgttgtggttcccatgt |
44662878 |
T |
|
| Q |
117 |
ggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggcaaagaaggaccatggagatgatgta |
192 |
Q |
| |
|
|||| || ||| | || || ||| |||||||||||||||||||||| ||||| || || || ||||| |||||||| |
|
|
| T |
44662879 |
ggcctgagggtgtcccagaaagttcatcagttcaggcaatattagactggcagaggagaacaatggatatgatgta |
44662954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 2416279 - 2416104
Alignment:
| Q |
17 |
attggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattttctgtgtacattgtcattccaatgt |
116 |
Q |
| |
|
|||||||||||||| || || ||||| || | || || |||||| | || |||||||||||||| || | || |||||||| |||| | ||||||| |
|
|
| T |
2416279 |
attggtgctttgcatctaatcccaaaggaactttcacttaagattatgagtaagattgaagctggggaaaagttcactgtgtacgttgttgtcccaatgt |
2416180 |
T |
|
| Q |
117 |
ggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggcaaagaaggaccatggagatgatgta |
192 |
Q |
| |
|
|||| || ||| | || || |||||||| ||||| |||||||| || ||||| || || || |||||||||||||| |
|
|
| T |
2416179 |
ggccggagggtgtcccagaaagtgcatcggttcaagcaatattggactggcagaggagaacaatggagatgatgta |
2416104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University