View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10026_low_12 (Length: 240)
Name: NF10026_low_12
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 31866751 - 31866543
Alignment:
| Q |
17 |
aaatgctagatagaaaaaactgctgaagtgcaagaatgcctaccgtgaaacttagaaatggatcatcattcccttcaattgatgttttagagaatccatg |
116 |
Q |
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| T |
31866751 |
aaatgctagaaagaaaaaactgctgaagtgcaagaatgcctaccgtaaaacttagaaatggatcatcattcc----aattgatgttttagataatccatg |
31866656 |
T |
|
| Q |
117 |
actttgaatgtttattgggaacatttacgtatattgatttttataaaatattttaagcatgcatcctatcatttctatgttgaagtcnnnnnnnntttaa |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31866655 |
actttgaatgtttattaggaacatttacgtatattgatttttataaaatattttaagcatgcatcctatcatttctatgttgaagtcacattttttttaa |
31866556 |
T |
|
| Q |
217 |
tcttgaataagag |
229 |
Q |
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||||||||||||| |
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| T |
31866555 |
tcttgaataagag |
31866543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 31856777 - 31856671
Alignment:
| Q |
30 |
aaaaaactgctgaagtgcaagaatgcctaccgtgaaacttagaaatggatcatcattcccttcaattgatgt---tttaga-gaatccatgactttgaat |
125 |
Q |
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||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||| ||| |||||||||||| | |
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| T |
31856777 |
aaaaaacagccgaagtgtaagaatgcctaccgtaaaacttagaaatggatcatcatttccttcaattaatgtttgtttagaggaacccatgactttgagt |
31856678 |
T |
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| Q |
126 |
gtttatt |
132 |
Q |
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||||||| |
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| T |
31856677 |
gtttatt |
31856671 |
T |
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