View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10026_low_13 (Length: 228)
Name: NF10026_low_13
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46138521 - 46138742
Alignment:
| Q |
1 |
tcacacccactcaccaacaccctccaaccaagcttcctcaccctatccaaaactccaacacaatccccaaccgttggattacaatactcatgatcacggt |
100 |
Q |
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| T |
46138521 |
tcacacccactcaccaacaccctccaaccaagcttcctcaccctatccaaaactccaacgcaatccccaaccgttggattacaatactcatgatcacggt |
46138620 |
T |
|
| Q |
101 |
caactccaaccggcaacgctagttcccacatcaagtcacacacatgaggtggcaaaacgggatcatttaacagcctcgactccgatgccaccctattggt |
200 |
Q |
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| T |
46138621 |
caactccaaccggcaacgctagttcccacatcaagtcacacacatgaggtggcaaaacgggatcatttaacagcctcgactccgatgccaccctattggt |
46138720 |
T |
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| Q |
201 |
cccaccaaaaaacggttgggac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
46138721 |
cccaccaaaaaacggttgggac |
46138742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 46140505 - 46140542
Alignment:
| Q |
70 |
accgttggattacaatactcatgatcacggtcaactcc |
107 |
Q |
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| T |
46140505 |
accgttggattacaatactcataatcacgatcaactcc |
46140542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 22339320 - 22339267
Alignment:
| Q |
57 |
aacacaatccccaaccgttggattacaatactcatgatcacggtcaactccaac |
110 |
Q |
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| T |
22339320 |
aacactatctcccaccgttggattacaatactcataatcacggttaactccaac |
22339267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 22416026 - 22415984
Alignment:
| Q |
67 |
ccaaccgttggattacaatactcatgatcacggtcaactccaa |
109 |
Q |
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|||||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
22416026 |
ccaaccgttggattgcaatactcatgattacgatcaactccaa |
22415984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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