View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10026_low_14 (Length: 222)
Name: NF10026_low_14
Description: NF10026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10026_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 8376690 - 8376527
Alignment:
| Q |
41 |
ttgggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagtgttaacggaaaaatatatatattcggatcaaaatatata |
140 |
Q |
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| T |
8376690 |
ttgggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtgaacaaaagtgttaacggaaaaatatatat--tcggatcaaaatatata |
8376593 |
T |
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| Q |
141 |
attttggatttttgggaggattgtgtatgtcataaaacatgagaggagatggttgtaatttgtgat |
206 |
Q |
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| T |
8376592 |
attttgcatttttgggaggattgtgtatgtcataaaacatgagaggagatggttgtaatttgtgat |
8376527 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 44895172 - 44895116
Alignment:
| Q |
45 |
gacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt |
101 |
Q |
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| T |
44895172 |
gacaaagaatgtcaatttgataaaataaaaaattgtttaacaaggctaaacaaaagt |
44895116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 14536397 - 14536340
Alignment:
| Q |
44 |
ggacaaagaaggtcattttgataaaataaaaaattgtttaaccagggtaaacaaaagt |
101 |
Q |
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| T |
14536397 |
ggacaaaaaatgtcattttgataaaataaaaaattatttagcaaggtcaaacaaaagt |
14536340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 8001316 - 8001275
Alignment:
| Q |
103 |
ttaacggaaaaatatatatattcggatcaaaatatataattttg |
146 |
Q |
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| T |
8001316 |
ttaacggaaaaatataaat--tcggatcaaaatatataattttg |
8001275 |
T |
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