View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10027_high_1 (Length: 256)

Name: NF10027_high_1
Description: NF10027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10027_high_1
NF10027_high_1
[»] chr8 (1 HSPs)
chr8 (1-240)||(3965690-3965916)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3965690 - 3965916
Alignment:
Q  1 ttgcatctttcattctcttgaacgttttaccatcctccatcacttaggtaagttctgaaattttcaagaaacattaaaa-catgtatttactgaacaaaa 99  Q
    ||||||||||||||||||| |||||||||||||||||||           |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  3965690 ttgcatctttcattctcttaaacgttttaccatcctcca-----------agttctgaaatttttaagaaacattaaaaacatgtatttactgaacaaaa 3965778  T
Q  100 aactcattaaaaatttgttcaaacaaattgtttatgaatggatattccaacaatctattaaaacttcatacaaaaggaccgatatagatattgtcacata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3965779 aactcattaaaaatttgttcaaacaaattgtttatgaatggatattccaacaatctattaaaacttcatacaaaaggaccgatatagatattgtcacata 3965878  T
Q  200 ttttgttacaaagatactatatgatattgatgtgagagagg 240  Q
    ||||||| |||| |   ||||||||||||||||||||||||    
T  3965879 ttttgttgcaaaca---tatatgatattgatgtgagagagg 3965916  T

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