View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10028_1 (Length: 795)
Name: NF10028_1
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_1 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 717; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 19 - 795
Target Start/End: Complemental strand, 935814 - 935040
Alignment:
| Q |
19 |
ctgtgatcgatgagtaatgaataacggcaacccttgcttgaaccaaaagtctaacaagtatatatataattaccactgatttcatgattaagaatgtaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935814 |
ctgtgatcgatgagtaatgaataacggaaacccttgcttgaaccaaaagtctaacaagtatatatataattaccactgatttcatgattaagaatgtaaa |
935715 |
T |
|
| Q |
119 |
tatgagtaatgtagatgattctatgatgatcaccagaatagtggcacatccagcagctatggtagctacagtgaacgagcagaacctgtgactcaacgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| || | |||||||| ||||||||| |
|
|
| T |
935714 |
tatgagtaatgtagatgattctatgatgatcaccagaatagtggcacctccagcagctatggtagctac-gagaac-aggacaacctgtgcctcaacgaa |
935617 |
T |
|
| Q |
219 |
gtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggttacagaaagaatgtcattcaagaaatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935616 |
gtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggttacagaaagaatgtcattcaagaaatt |
935517 |
T |
|
| Q |
319 |
gaatcctgtttaattttcactctcatgtaatagcatgactaatctctaattgcttgtgattgtgcaatattaattttgatatttcatgtcatttccaatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
935516 |
gaatcctgtttaattttcactctcatgtaatagcatgactaatctctaattgcttgtgattgtgcaatattaattttgatgtttcatgtcatttccaatg |
935417 |
T |
|
| Q |
419 |
caaatacttgtcagctttgagttattaaacaaatattaaactttacaaacgaatataacaattttacaccttagactaacgtgacaacaaagttaaactt |
518 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935416 |
caaatacttgtgagctttgagttattaaacaaatattaaactttacaaacgaatataacaattttacaccttagactaacgtgacaacaaagttaaactt |
935317 |
T |
|
| Q |
519 |
ccatgttctaagagctttctttttctccttttaatgacttataaaaccaatttaatatatttataggccttatataactatttactcaaaactttcctcg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935316 |
ccatgttctaagagctttctttttctccttttaatgacttataaaacgaatttaatatatttataggccttatataactatttactcaaaactttcctcg |
935217 |
T |
|
| Q |
619 |
aaaaataacaatctaaatgacttccaatacagaaaataaattgaccatcaaatcgaacaagtcaatacatatatagagtaatttagcatagctattagta |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935216 |
aaaaataacaatctaaatgacttccaatacagaaaataaattgaccatcaaatcgaacaagtcaatacatatatagagtaatttagcatagctattagta |
935117 |
T |
|
| Q |
719 |
gtcatacggttcacaattcactttggcacgtgaataatgcattagaatagtgttgataatgttacaatggcaattag |
795 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935116 |
gtcatacggttcacaattcgctttggcatgtgaataatgcattagaatagtgttgataatgttacaatggcaattag |
935040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 95 - 405
Target Start/End: Complemental strand, 937513 - 937201
Alignment:
| Q |
95 |
tgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgatcaccagaatagtggcacatccagcagctatggtagctacagtgaac |
194 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||||||||||||||||| || |||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
937513 |
tgatttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgataactggaatagtggcacctccagcagctatggtagcta-agagaac |
937415 |
T |
|
| Q |
195 |
gagcagaacctgtgactcaacgaagtgttaccaaatccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggttac |
294 |
Q |
| |
|
|| | | ||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||| || || || |
|
|
| T |
937414 |
-aggacagtctgtgcctcaactaagtgttatgaaagccattcctgatgttatctttgtcccaacagctactattttagctctcattgctgttaaagtcac |
937316 |
T |
|
| Q |
295 |
agaaagaatgtcattcaagaaattgaatcctgtttaattttcactc-tcat---gtaatagcatgactaatctctaattgcttgtgattgtgcaatatta |
390 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| ||| | || |||||| ||||||||||||| |||||||||| |||||||||| || |
|
|
| T |
937315 |
caaaagaatgtcattgaagaaattgaatcctatttaattttctctcttgatgtagtaataacatgactaatctccaattgcttgtaattgtgcaatgttt |
937216 |
T |
|
| Q |
391 |
attttgatatttcat |
405 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
937215 |
agtttgatgtttcat |
937201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 231 - 386
Target Start/End: Original strand, 7584365 - 7584526
Alignment:
| Q |
231 |
ccattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgtaaaggttacagaaagaatgtcattcaaga--aattgaatcctgtt |
328 |
Q |
| |
|
|||||| ||||||||| | |||||||||| ||||||||| |||||| ||| ||||||| || | |||||||||| ||||||| ||||||||||| || |
|
|
| T |
7584365 |
ccattcttgatgttatatctgtcccaacaactacagttttggctctcattactgtaaaagtcatctaaagaatgtctttcaagataaattgaatcctatt |
7584464 |
T |
|
| Q |
329 |
taattttcactc-tcatg---taatagcatgactaatctctaattgcttgtgattgtgcaat |
386 |
Q |
| |
|
|||||| | || | ||| ||||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
7584465 |
taatttcctttcttaatgtaataatagcatgattaatctccaatagcttgtgattgtgcaat |
7584526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 7584254 - 7584348
Alignment:
| Q |
92 |
cactgatttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgatcaccagaatagtggcacatccagcagctatggtagcta |
186 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||| |||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||| |
|
|
| T |
7584254 |
cactgatttcatggttaagaatataaatattagtaaagtagatgattatatgatgatcaatggaatagtatcacctacagcagctatgatagcta |
7584348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 7585961 - 7586030
Alignment:
| Q |
256 |
aacagctacagtttaggctcttattgctgtaaaggttacagaaagaatgtcattcaagaaattgaatcct |
325 |
Q |
| |
|
|||||||||| ||| |||||| |||||| |||| || | ||||||||||||| ||||||||||||||| |
|
|
| T |
7585961 |
aacagctacaattttggctctcattgctataaaagtcatcaaaagaatgtcatttaagaaattgaatcct |
7586030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 38410442 - 38410495
Alignment:
| Q |
232 |
cattcctgatgttatctttgtcccaacagctacagtttaggctcttattgctgt |
285 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |||||| |||||||| |
|
|
| T |
38410442 |
cattcctgatgttatctttgttccctcagctacagttttggctctcattgctgt |
38410495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University