View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10028_10 (Length: 358)
Name: NF10028_10
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 26 - 353
Target Start/End: Complemental strand, 24724395 - 24724068
Alignment:
| Q |
26 |
atagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaagctgattggattgtattgccttaatcctttc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24724395 |
atagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaagctgataggattgtattgccttaatcctttc |
24724296 |
T |
|
| Q |
126 |
cctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctgaaccagcactcgtatcgctatgcacgtaac |
225 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24724295 |
cctgaaacaaaactatttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctgaaccagcactcatatcgctatgcacgtaac |
24724196 |
T |
|
| Q |
226 |
aatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaaaaccgaagaaggcccaccatgggaagaatc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24724195 |
aatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaaaaccgaagaaggcccgccatgggaagaatc |
24724096 |
T |
|
| Q |
326 |
tacaatgataagaggtttctctgctcct |
353 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
24724095 |
tacaatgataagaggtttctctggtcct |
24724068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 346
Target Start/End: Complemental strand, 24733103 - 24732787
Alignment:
| Q |
30 |
tgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaagctgattggattgtattgccttaatcctttccctg |
129 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||| || | |
|
|
| T |
24733103 |
tgctcatccctaaagttgaacaatgggtctaaaagaaaattctggtttgcacctttagcaacaaagctgataggatggtattgccttaatcctttgccgg |
24733004 |
T |
|
| Q |
130 |
aaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctgaaccagcactcgtatcgctatgcacgtaacaatc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24733003 |
aaacaaaactagttgcttggttaaaactagcttcagaagcagtcttgcaccttagcttaactcctgaaccagcactcatatcgctatgcacgtaacaatc |
24732904 |
T |
|
| Q |
230 |
tttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaaaaccgaagaaggcccaccatgggaagaatctaca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
24732903 |
tttattgctttgtgattctaaagatattgtttgatttcgtccatccaatcctggtaccacaagaaaaaccgatgaaggccccccatgggaagaatctaca |
24732804 |
T |
|
| Q |
330 |
atgataagaggtttctc |
346 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24732803 |
atgataagaggtttctc |
24732787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 26 - 342
Target Start/End: Complemental strand, 24693658 - 24693342
Alignment:
| Q |
26 |
atagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaagctgattggattgtattgccttaatcctttc |
125 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
24693658 |
atagtgttcatccctaaagttgaacaatggctctaaaagaaaattctggtttcctcctttagccacaaagctgataggatggtattgccttaatcctttc |
24693559 |
T |
|
| Q |
126 |
cctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctgaaccagcactcgtatcgctatgcacgtaac |
225 |
Q |
| |
|
|| ||||| ||||| | ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
24693558 |
ccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaactcctgaaccagagctcatatcgctatacacgtaac |
24693459 |
T |
|
| Q |
226 |
aatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaaaaccgaagaaggcccaccatgggaagaatc |
325 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||| |
|
|
| T |
24693458 |
aatctttattgctttgtgattgtaaagatattgtttgatttcgtccatccaagcctggtaccacaagaaaaactgaagaaggcccgccaagggaggaatc |
24693359 |
T |
|
| Q |
326 |
tacaatgataagaggtt |
342 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
24693358 |
tacaacaataagaggtt |
24693342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 24748275 - 24748047
Alignment:
| Q |
26 |
atagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaagctgattggattgtattgccttaatcctttc |
125 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||| ||| | |||| ||||||||||||||||||| |
|
|
| T |
24748275 |
atagttctcatccctaaagttgaacaatggctctaaaataaaattctggtttgctcctttagccaaaaaactggtaggatggtattgccttaatcctttc |
24748176 |
T |
|
| Q |
126 |
cctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctgaaccagcactcgtatcgctatgcacgtaac |
225 |
Q |
| |
|
|| ||||| ||||| ||| ||||||||||||| | |||||| |||||||||| |||||||||| ||||||||| ||| |||| ||||||||||||| |
|
|
| T |
24748175 |
ccggaaacgaaacttgtttcttggttaaaacttgcttcagatccagacttgcatctgagcttaactcttgaaccagcgctcatatcactatgcacgtaac |
24748076 |
T |
|
| Q |
226 |
aatctttattgctttgtgattctaaagat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24748075 |
aatctttattgctttgtgattctaaagat |
24748047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 24706871 - 24706799
Alignment:
| Q |
29 |
gtgctcatccctgaagttgaacagtggctctaaaa-gaaaattctgatttgcacctttagccacaaagctgat |
100 |
Q |
| |
|
|||||||| | ||||||| |||| ||||||||||| ||||||| || ||| | ||||||||||||||| |||| |
|
|
| T |
24706871 |
gtgctcattcttgaagttaaacaatggctctaaaaagaaaattatggtttcctcctttagccacaaagttgat |
24706799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University