View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10028_12 (Length: 326)

Name: NF10028_12
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10028_12
NF10028_12
[»] chr5 (34 HSPs)
chr5 (15-326)||(38816628-38816932)
chr5 (36-165)||(22423764-22423895)
chr5 (116-188)||(19820428-19820500)
chr5 (124-188)||(22013367-22013431)
chr5 (117-188)||(42469174-42469245)
chr5 (117-166)||(15410483-15410532)
chr5 (117-169)||(6326332-6326384)
chr5 (68-152)||(3966492-3966577)
chr5 (118-176)||(15382442-15382500)
chr5 (119-152)||(6035472-6035505)
chr5 (34-83)||(8420075-8420124)
chr5 (116-169)||(21191090-21191143)
chr5 (36-88)||(9929668-9929720)
chr5 (116-152)||(17123037-17123073)
chr5 (125-169)||(21522722-21522766)
chr5 (125-169)||(21533288-21533332)
chr5 (116-152)||(27144452-27144488)
chr5 (68-152)||(11685928-11686012)
chr5 (116-159)||(14674251-14674294)
chr5 (116-159)||(19579683-19579726)
chr5 (117-176)||(21137654-21137713)
chr5 (116-159)||(34879332-34879375)
chr5 (117-159)||(5873548-5873590)
chr5 (34-64)||(24906250-24906280)
chr5 (117-147)||(27932229-27932259)
chr5 (116-150)||(28588708-28588742)
chr5 (123-169)||(36642803-36642849)
chr5 (124-188)||(2436881-2436939)
chr5 (116-165)||(19552577-19552626)
chr5 (114-143)||(32766975-32767004)
chr5 (116-188)||(6247575-6247647)
chr5 (116-176)||(13287433-13287493)
chr5 (116-152)||(31084312-31084348)
chr5 (68-152)||(41995460-41995543)
[»] chr6 (42 HSPs)
chr6 (68-169)||(10294079-10294181)
chr6 (116-176)||(9027143-9027203)
chr6 (68-176)||(16766662-16766771)
chr6 (116-188)||(853893-853965)
chr6 (116-176)||(5000660-5000720)
chr6 (36-176)||(5732474-5732604)
chr6 (36-166)||(8805524-8805656)
chr6 (68-176)||(9107355-9107464)
chr6 (116-167)||(9629357-9629408)
chr6 (117-188)||(12696278-12696348)
chr6 (116-166)||(9658854-9658904)
chr6 (116-154)||(19040339-19040377)
chr6 (123-188)||(8365560-8365625)
chr6 (116-176)||(7938081-7938141)
chr6 (117-165)||(13851712-13851760)
chr6 (116-188)||(30866178-30866250)
chr6 (117-188)||(6389696-6389767)
chr6 (117-176)||(7977865-7977924)
chr6 (116-159)||(20371144-20371187)
chr6 (73-176)||(34073337-34073441)
chr6 (116-169)||(426548-426601)
chr6 (123-188)||(3398572-3398637)
chr6 (116-157)||(7265627-7265668)
chr6 (116-168)||(8777007-8777059)
chr6 (116-176)||(34595099-34595159)
chr6 (36-83)||(426478-426525)
chr6 (116-159)||(17841623-17841666)
chr6 (85-168)||(31579229-31579311)
chr6 (34-64)||(34073276-34073306)
chr6 (36-77)||(2117134-2117175)
chr6 (116-149)||(10842524-10842557)
chr6 (72-166)||(26562664-26562759)
chr6 (116-152)||(677826-677862)
chr6 (116-152)||(7996412-7996448)
chr6 (116-152)||(8022353-8022389)
chr6 (116-152)||(10339160-10339196)
chr6 (116-168)||(16833281-16833333)
chr6 (116-152)||(17341698-17341734)
chr6 (117-149)||(21395342-21395374)
chr6 (116-152)||(21424836-21424872)
chr6 (116-188)||(31959113-31959184)
chr6 (68-152)||(34290064-34290147)
[»] chr7 (38 HSPs)
chr7 (117-188)||(27944994-27945065)
chr7 (66-148)||(29787354-29787435)
chr7 (116-169)||(11722132-11722185)
chr7 (68-178)||(24339605-24339716)
chr7 (85-166)||(19206025-19206107)
chr7 (117-188)||(24105632-24105702)
chr7 (68-152)||(32308109-32308194)
chr7 (36-146)||(11700798-11700909)
chr7 (116-176)||(1433419-1433479)
chr7 (116-167)||(2425767-2425818)
chr7 (117-176)||(43249958-43250017)
chr7 (116-158)||(8046061-8046103)
chr7 (85-152)||(22484014-22484082)
chr7 (116-158)||(23191879-23191921)
chr7 (116-166)||(26733279-26733329)
chr7 (73-147)||(30731031-30731104)
chr7 (76-149)||(11072290-11072362)
chr7 (118-167)||(49107795-49107844)
chr7 (120-188)||(2034395-2034462)
chr7 (36-196)||(7328639-7328805)
chr7 (116-152)||(20549780-20549816)
chr7 (116-188)||(43027503-43027575)
chr7 (116-155)||(2948669-2948708)
chr7 (68-152)||(6630897-6630982)
chr7 (116-159)||(21828439-21828482)
chr7 (117-148)||(28155563-28155594)
chr7 (117-167)||(5235960-5236010)
chr7 (68-134)||(9933282-9933347)
chr7 (116-158)||(20545270-20545312)
chr7 (118-176)||(26329418-26329476)
chr7 (118-167)||(4017830-4017879)
chr7 (35-64)||(17852091-17852120)
chr7 (119-152)||(25791642-25791675)
chr7 (116-176)||(598173-598233)
chr7 (116-168)||(11061110-11061162)
chr7 (36-64)||(15680900-15680928)
chr7 (116-176)||(17851396-17851456)
chr7 (116-152)||(22868031-22868067)
[»] chr8 (21 HSPs)
chr8 (68-169)||(22651948-22652050)
chr8 (68-174)||(29510289-29510396)
chr8 (123-188)||(25192388-25192453)
chr8 (116-182)||(926822-926888)
chr8 (116-169)||(27213519-27213572)
chr8 (116-159)||(31109552-31109595)
chr8 (116-178)||(24362236-24362298)
chr8 (123-168)||(126390-126435)
chr8 (116-149)||(39954313-39954346)
chr8 (116-188)||(13436998-13437070)
chr8 (116-156)||(31236611-31236651)
chr8 (83-159)||(37283812-37283887)
chr8 (116-178)||(4673459-4673521)
chr8 (116-150)||(27101506-27101540)
chr8 (116-158)||(34897068-34897110)
chr8 (116-149)||(13844630-13844663)
chr8 (116-176)||(2572090-2572150)
chr8 (116-168)||(4298920-4298972)
chr8 (116-188)||(11944618-11944690)
chr8 (116-168)||(20873042-20873094)
chr8 (68-164)||(29776013-29776108)
[»] chr2 (32 HSPs)
chr2 (80-188)||(21782817-21782924)
chr2 (127-188)||(33519739-33519800)
chr2 (116-188)||(20539708-20539780)
chr2 (85-176)||(4332891-4332981)
chr2 (116-166)||(21616737-21616787)
chr2 (85-143)||(1327976-1328033)
chr2 (118-188)||(19536434-19536504)
chr2 (68-166)||(36409614-36409711)
chr2 (91-176)||(18276486-18276570)
chr2 (119-168)||(23717999-23718048)
chr2 (119-168)||(24105671-24105720)
chr2 (36-149)||(19573970-19574078)
chr2 (68-141)||(44860320-44860394)
chr2 (66-154)||(18420417-18420506)
chr2 (36-83)||(19536361-19536408)
chr2 (125-188)||(21624219-21624282)
chr2 (116-151)||(37411278-37411313)
chr2 (37-83)||(18255945-18255991)
chr2 (86-176)||(28412315-28412404)
chr2 (116-174)||(31018557-31018615)
chr2 (37-83)||(34691770-34691816)
chr2 (37-83)||(34714182-34714228)
chr2 (117-178)||(4142875-4142936)
chr2 (117-158)||(21091706-21091747)
chr2 (116-188)||(38117193-38117259)
chr2 (116-152)||(896200-896236)
chr2 (71-159)||(2331776-2331863)
chr2 (117-165)||(10535794-10535842)
chr2 (116-168)||(30404884-30404936)
chr2 (116-148)||(31284041-31284073)
chr2 (36-72)||(42511322-42511358)
chr2 (117-149)||(42832311-42832343)
[»] chr1 (36 HSPs)
chr1 (116-168)||(6427323-6427375)
chr1 (116-176)||(40917716-40917776)
chr1 (116-175)||(398799-398858)
chr1 (116-168)||(2896155-2896207)
chr1 (37-183)||(10572535-10572690)
chr1 (116-186)||(5927374-5927444)
chr1 (117-170)||(5376535-5376588)
chr1 (36-89)||(48547938-48547991)
chr1 (116-160)||(12443494-12443538)
chr1 (116-152)||(17831565-17831601)
chr1 (116-152)||(36878450-36878486)
chr1 (77-169)||(1486703-1486796)
chr1 (76-176)||(38503285-38503386)
chr1 (34-137)||(44482234-44482343)
chr1 (123-178)||(48040503-48040558)
chr1 (91-169)||(1262856-1262933)
chr1 (116-166)||(9709795-9709845)
chr1 (116-166)||(34298411-34298461)
chr1 (116-152)||(19562655-19562691)
chr1 (117-152)||(609493-609528)
chr1 (116-159)||(6415035-6415078)
chr1 (116-159)||(46348417-46348460)
chr1 (117-168)||(48450622-48450673)
chr1 (118-152)||(3490426-3490460)
chr1 (116-150)||(10475011-10475045)
chr1 (116-182)||(15641064-15641130)
chr1 (114-152)||(40285686-40285724)
chr1 (116-169)||(20157384-20157437)
chr1 (116-149)||(21530681-21530714)
chr1 (68-146)||(25361881-25361960)
chr1 (117-146)||(41877505-41877534)
chr1 (68-149)||(9828036-9828118)
chr1 (116-176)||(10577769-10577829)
chr1 (123-159)||(18556497-18556533)
chr1 (85-149)||(25452152-25452215)
chr1 (116-188)||(31014996-31015068)
[»] scaffold0223 (1 HSPs)
scaffold0223 (36-188)||(20125-20279)
[»] scaffold0168 (3 HSPs)
scaffold0168 (36-182)||(21002-21149)
scaffold0168 (36-97)||(21217-21278)
scaffold0168 (36-97)||(21346-21407)
[»] chr3 (36 HSPs)
chr3 (116-185)||(8383213-8383282)
chr3 (79-178)||(5441029-5441128)
chr3 (66-155)||(8039818-8039908)
chr3 (117-176)||(24205076-24205135)
chr3 (95-160)||(5407261-5407325)
chr3 (116-176)||(28917966-28918026)
chr3 (117-176)||(4991002-4991061)
chr3 (125-188)||(8842283-8842346)
chr3 (123-182)||(10335327-10335386)
chr3 (117-167)||(9800014-9800064)
chr3 (68-169)||(25064881-25064981)
chr3 (116-168)||(2620087-2620139)
chr3 (116-188)||(8587055-8587127)
chr3 (116-176)||(15796328-15796388)
chr3 (116-168)||(26492239-26492291)
chr3 (116-188)||(32429414-32429486)
chr3 (116-188)||(55401028-55401100)
chr3 (120-159)||(21720746-21720785)
chr3 (34-72)||(4466538-4466576)
chr3 (34-64)||(5440965-5440995)
chr3 (116-166)||(12674535-12674585)
chr3 (34-72)||(13807237-13807275)
chr3 (118-159)||(3865592-3865633)
chr3 (118-159)||(12703989-12704030)
chr3 (95-148)||(34307794-34307846)
chr3 (116-176)||(3164059-3164119)
chr3 (116-152)||(4987325-4987361)
chr3 (116-152)||(6525714-6525750)
chr3 (123-159)||(10318075-10318111)
chr3 (116-160)||(14832080-14832124)
chr3 (116-152)||(21479107-21479143)
chr3 (117-149)||(25074781-25074813)
chr3 (116-152)||(26290360-26290396)
chr3 (116-168)||(26508083-26508135)
chr3 (36-72)||(27505334-27505370)
chr3 (116-152)||(40052321-40052357)
[»] scaffold0306 (1 HSPs)
scaffold0306 (116-188)||(13353-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (116-188)||(21902-21974)
[»] scaffold0053 (1 HSPs)
scaffold0053 (116-176)||(8763-8823)
[»] scaffold0018 (2 HSPs)
scaffold0018 (116-192)||(178853-178929)
scaffold0018 (117-158)||(192284-192325)
[»] scaffold0007 (1 HSPs)
scaffold0007 (117-176)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (68-176)||(241559-241668)
[»] scaffold0004 (1 HSPs)
scaffold0004 (117-158)||(92790-92831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (66-151)||(53170-53256)
[»] chr4 (18 HSPs)
chr4 (116-176)||(23293020-23293080)
chr4 (117-152)||(35723420-35723455)
chr4 (118-152)||(17345451-17345485)
chr4 (117-174)||(847918-847975)
chr4 (116-169)||(36635296-36635349)
chr4 (117-176)||(24343472-24343531)
chr4 (68-174)||(30982863-30982967)
chr4 (117-159)||(7012048-7012090)
chr4 (116-166)||(20521883-20521933)
chr4 (118-176)||(20633450-20633508)
chr4 (36-159)||(30298928-30299048)
chr4 (36-159)||(30327796-30327916)
chr4 (116-150)||(40613441-40613475)
chr4 (118-187)||(28084475-28084544)
chr4 (116-148)||(1747205-1747237)
chr4 (116-159)||(16184801-16184842)
chr4 (36-80)||(18844423-18844467)
chr4 (36-72)||(28470448-28470484)
[»] scaffold0652 (1 HSPs)
scaffold0652 (116-176)||(496-556)
[»] scaffold0475 (1 HSPs)
scaffold0475 (117-176)||(3281-3340)
[»] scaffold0103 (1 HSPs)
scaffold0103 (116-159)||(51793-51836)
[»] scaffold0697 (1 HSPs)
scaffold0697 (116-149)||(1636-1669)
[»] scaffold0279 (1 HSPs)
scaffold0279 (115-148)||(17903-17936)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-161)||(28830-28913)
[»] scaffold0450 (1 HSPs)
scaffold0450 (36-64)||(8564-8592)
[»] scaffold0027 (2 HSPs)
scaffold0027 (116-168)||(46655-46707)
scaffold0027 (34-82)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 38816628 - 38816932
Alignment:
Q  15 tatcacgattcacgaatataactatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatag 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38816628 tatcacgattcacgaatataactatgaatcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattatactgaaatatag 38816727  T
Q  115 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcacagtatatggttaccgttcaattatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||| |||||||||||||||||||||||||    
T  38816728 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaattatt 38816820  T
Q  215 ctattttctcaaattattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagc 314  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816821 ctattttctcaaattattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagc 38816920  T
Q  315 gactctctgttg 326  Q
    ||||||||||||    
T  38816921 gactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 22423764 - 22423895
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattatt 132  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||||||| |||  |||||| |||| ||| | |||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgacatatataattatattgaattat-gtgattttctcaaattatt 22423862  T
Q  133 agcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    ||  ||||| | ||||||||||||||| |||||    
T  22423863 agtagtgtcagggtgtcagtatccgtgtcgtgt 22423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 19820428 - 19820500
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||| |||||||||    
T  19820428 gattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 19820500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 22013431 - 22013367
Alignment:
Q  124 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| |||||||| |||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 22013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 42469245 - 42469174
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||||||| | |||||||||||||| |||||||| ||||| ||| |||||| | |||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttca 42469174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 15410483 - 15410532
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  15410483 attttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 6326332 - 6326384
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  6326332 attttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 3966577 - 3966492
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||| ||||| |||||||||||||  |||| | |||| | | | ||||||||||||||||||||||||||||| |||||||    
T  3966577 tgtccgacactgacacgacaccgacacatataattacactgaattgt-gtgattttctcaaattattagcggtgtcggcatgtcagt 3966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 15382500 - 15382442
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 21191090 - 21191143
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||| |||||||||    
T  21191090 gattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 88  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 17123073 - 17123037
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17123073 gattttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21522766 - 21522722
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21533332 - 21533288
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 27144488 - 27144452
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27144488 gatttcctcaaattattagcggtgtcggcgtgtcagt 27144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 11686012 - 11685928
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||| || |||||||||||||  |||| | | || ||| |||| |||||||||||||||||||||||||| |||||||    
T  11686012 tgtccgacaccga-acgacaccgacacatataattacactaaattat-gcgactttctcaaattattagcggtgtcggcatgtcagt 11685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 14674294 - 14674251
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  14674294 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 14674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 19579726 - 19579683
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||    
T  19579726 gattttctcaaattattagctgtgtcggcgtatcagtgtccgtg 19579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 21137713 - 21137654
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||  |||||||| ||||||    
T  21137713 attttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgt 21137654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 34879375 - 34879332
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||    
T  34879375 gattttctcaaatttttagcggtgccggcgtgtccgtatccgtg 34879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 5873548 - 5873590
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  5873548 attttctcaaattattagaggtgtcggcatgtcagtgtccgtg 5873590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 27932259 - 27932229
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||||||||||||||||||||    
T  27932259 attttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 28588708 - 28588742
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||||||||||||||| ||||||||||||||||    
T  28588708 gattttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 36642803 - 36642849
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  36642803 tcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 36642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 2436939 - 2436881
Alignment:
Q  124 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||||||||||||      ||| ||||||||| |||||||| |||||||||    
T  2436939 caaattattagcggtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttca 2436881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 19552577 - 19552626
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||    
T  19552577 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgt 19552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 32766975 - 32767004
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcgg 143  Q
    ||||||||||||||||||||||||||||||    
T  32766975 gcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 6247647 - 6247575
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||  |||||||||||||||| | |||  ||||||||| ||||| || |||| ||||    
T  6247647 gattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccgcatccgtgtttca 6247575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 13287433 - 13287493
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||| | |||||| ||||| ||| |||||| ||||||||| ||||||    
T  13287433 gattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgt 13287493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 31084348 - 31084312
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31084348 gattttttcaaattattagctgtgtcggcgtgtcagt 31084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 41995543 - 41995460
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||| ||  ||||||||| |||||| | |||| ||| | |||||| || |||||||||  ||||||||||||||||    
T  41995543 tgtccgacaccgatacggcaccgacacttaattacattgaattat-gtgattttttcgaattattagttgtgtcggcgtgtcagt 41995460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 10294181 - 10294079
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    ||||||||||| |||| |||||||||||||  |||| | |||||||| |||||| |||||||||||||||||| ||||| |||||||||||||| |||||    
T  10294181 tgtccgacaccaacacgacaccgacacatataattacattgaaatat-gcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgt 10294083  T
Q  166 ccgg 169  Q
    ||||    
T  10294082 ccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 9027203 - 9027143
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  9027203 gattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 16766771 - 16766662
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| |||||||||||||||| ||| || |||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgt 16766673  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  16766672 ccggtgtccgt 16766662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 853893 - 853965
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||| |||||||| |||| ||||    
T  853893 gattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattca 853965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 5000660 - 5000720
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  5000660 gattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 5732474 - 5732604
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 135  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||         | ||||||| | | |||||| | |||||||||||||||||| |    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac---------atataattacactaaaatat-gtgattttctcaaattattaac 5732563  T
Q  136 ggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| ||| || ||||||| | ||||||    
T  5732564 ggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgt 5732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 8805524 - 8805656
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgac---accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatt 132  Q
    ||||||||||||||||||||||| ||||| ||||||| ||    | ||||| ||||||||||||||||| | | || ||| | |||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacacataattacactaaattat-gtgattttctcaaattatt 8805622  T
Q  133 agcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    ||| ||| || |||||| || || ||| ||||||    
T  8805623 agcagtgccgacgtgtcggtgtctgtgtcgtgtc 8805656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 9107355 - 9107464
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| | | | |||||| ||||||||||||| |||||||||||| ||| |||||| |||||    
T  9107355 tgtccgacaccgacacgacaccgacacttgtaattacactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgt 9107453  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  9107454 ccggtgtccgt 9107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 9629408 - 9629357
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  9629408 gattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 12696348 - 12696278
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| ||||||| | |||||||| |||||||||    
T  12696348 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttca 12696278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9658904 - 9658854
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9658904 gattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 19040377 - 19040339
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtat 154  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040377 gattttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 8365560 - 8365625
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||  |||||||||||||||| |||||| |||||| || |||||||| |||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttca 8365625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 7938141 - 7938081
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  7938141 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 13851760 - 13851712
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 30866178 - 30866250
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||||||||||||||| || ||||| || || ||| | ||||||| |||||||||||| |||||    
T  30866178 gattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttca 30866250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 6389767 - 6389696
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||||||| | |||||||||||| ||| |||||| ||||||||| ||| || | |||||||||    
T  6389767 attttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttca 6389696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 7977865 - 7977924
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||| | ||||||    
T  7977865 attttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 20371144 - 20371187
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  20371144 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtg 20371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 34073337 - 34073441
Alignment:
Q  73 gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga 170  Q
    ||||||||||| |||||||| ||||  |||| | |||| ||| | ||||||||||||||||||||| ||| ||| ||||||| |||||| ||||||| |     
T  34073337 gacaccgacacgacaccgacccatataattacactgaattat-gagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagt 34073435  T
Q  171 gtccgt 176  Q
    ||||||    
T  34073436 gtccgt 34073441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 426548 - 426601
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  426548 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 3398637 - 3398572
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||  |||||||| | |||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttca 3398572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 7265627 - 7265668
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccg 157  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  7265627 gattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 8777007 - 8777059
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||    
T  8777007 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 34595159 - 34595099
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||    
T  34595159 gattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 17841623 - 17841666
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  17841623 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 17841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 31579229 - 31579311
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||| | |||| ||| | |||||||||||||||||| |||||| || ||| |||| ||| || ||||||||    
T  31579229 acaccgacacataattacactgaattat-gtgattttctcaaattattaacggtgttggtgtggcagtgtccatgtcgtgtccg 31579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacac 77  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 10842557 - 10842524
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||| |||||||||||||||||||||||||||    
T  10842557 gattttttcaaattattagcggtgtcggcgtgtc 10842524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 26562759 - 26562664
Alignment:
Q  72 cgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||||||||| ||| |||||||||  |||| | |||| ||| | |||||||||||||| ||||| ||||||||||||| || | ||||| |||||    
T  26562759 cgacaccgacacgacatcgacacatataattacactgaattat-gtgattttctcaaatttttagcagtgtcggcgtgtccgtgttcgtgcggtgtc 26562664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 677862 - 677826
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| | ||||||||||||||||    
T  677862 gattttctcaaattattaacagtgtcggcgtgtcagt 677826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 7996412 - 7996448
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| |||||||| |||||||    
T  7996412 gattttctcaaattattagcagtgtcggcatgtcagt 7996448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 8022389 - 8022353
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8022389 gattttctcaaattattagcagtgtcggcatgtcagt 8022353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 10339160 - 10339196
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||| | |||||||||||||||||||    
T  10339160 gattttctcaaattaatcgcggtgtcggcgtgtcagt 10339196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 16833333 - 16833281
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||||  |||||||||||||||| || ||| ||||||||    
T  16833333 gattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17341698 - 17341734
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  17341698 gattttatcaaattattaacggtgtcggcgtgtcagt 17341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 21395342 - 21395374
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||||||||| ||||||||    
T  21395342 attttctcaaattattagcggtgttggcgtgtc 21395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 21424836 - 21424872
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21424836 gattttttcaaattattagcggtgttggcgtgtcagt 21424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 31959184 - 31959113
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||| ||| |||||||||||| | |||| | ||||| | |||||||| |||||||||    
T  31959184 gattttttcaaattattagctgtgacggcgtgtcagtgttcgtgtcatgtcc-gtgtccgtatccgtgcttca 31959113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 34290064 - 34290147
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||| ||||| ||||| ||||||||||||||||| | |||| ||| | |||| || |||||||||||  |||||||| |||||||    
T  34290064 tgtcggacactgacacgacaccgacacataattacactgaattat-gtgattctcgcaaattattagttgtgtcggcatgtcagt 34290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 27945065 - 27944994
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 27944994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 29787354 - 29787435
Alignment:
Q  66 catgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||| |||||||||  ||||| ||||||||||| | |||| ||| | |||||||||||||||||||||||||||||||||    
T  29787354 catgtccaacaccgacattacaccaacacataattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 11722132 - 11722185
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11722132 gattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 24339716 - 24339605
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| |||||||||||||| | ||| || |||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgt 24339618  T
Q  166 ccggagtccgtat 178  Q
    |||| ||||||||    
T  24339617 ccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 19206107 - 19206025
Alignment:
Q  85 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||||||||||  ||||||||||| ||| | |||||||||||||||||||||||||||||||||  || |||||| ||||||    
T  19206107 acaccgacacatataattataatgaattat-gtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtc 19206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 24105702 - 24105632
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| |||||||| | ||||||| |||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttca 24105632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 32308194 - 32308109
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||| |||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||||||||||||||||||||||||    
T  32308194 tgtccaacaccgacacgacactgacacatacaattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 11700909 - 11700798
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgt--ccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatta 133  Q
    ||||||| || |||||||||||| ||||||| |||  |||||||||| || |||| |||||||||||| | |||| ||| | |||||| |||||||||||    
T  11700909 ctatgaatcagggacactcctcggattagccgtgtgtccgacaccgagacaacacagacacataattacattgaattat-gtgattttgtcaaattatta 11700811  T
Q  134 gcggtgtcggcgt 146  Q
     ||||||| ||||    
T  11700810 acggtgtcagcgt 11700798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 1433479 - 1433419
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||||||||||||| |||||||||||||||| | |||||| ||||| ||| ||||||    
T  1433479 gattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 2425767 - 2425818
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2425767 gattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 43250017 - 43249958
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||||||||||||||| |||||| | ||||||| ||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 8046061 - 8046103
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8046061 gattttctcaaattattagtggtgttggcgtgtcagtatccgt 8046103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 22484082 - 22484014
Alignment:
Q  85 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||  |||||| |||| ||| || ||||||| ||||||||||||||||||||||||||||    
T  22484082 acaccgacacatataattatactgaattat-gcaattttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 23191921 - 23191879
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  23191921 gattttctcaaattattagcggtgtcggcgtatcagtgtccgt 23191879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 26733329 - 26733279
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||| |||||||||||||||||||| ||||||||| |||||| ||||||    
T  26733329 gattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 30731104 - 30731031
Alignment:
Q  73 gacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    |||||| |||| ||||||||||| ||||| | |||| ||| | ||||||||||||||||| ||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaattacactgaattat-gtgattttctcaaattattcgcggtgtcggcgtg 30731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 11072362 - 11072290
Alignment:
Q  76 accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||| ||||||||||||||||||| |||| ||||    |||| ||||||||||| |||||||||||||||    
T  11072362 accgacacgacaccgacacataattatattgaattata-tatttttttcaaattattatcggtgtcggcgtgtc 11072290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 49107844 - 49107795
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtgtcc 49107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 2034462 - 2034395
Alignment:
Q  120 ttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||||| ||||||| ||||| |||||||||| |||||| | | ||||||| |||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttca 2034395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 7328639 - 7328805
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacacc-----gacaccacaccgacacata--attataatgaaatatagcgattttctcaaat 128  Q
    |||||||||||| |||||| ||| ||||| | |||||||||||     ||||| |||||||||||||  |||| | | || ||| |  ||||||||||||    
T  7328639 ctatgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacacgacaccgacacatataattacactaaattat-gttattttctcaaat 7328737  T
Q  129 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcacagtatat 196  Q
    ||||||| || ||| ||||| | | || ||| ||||| ||| |||||||| ||||||||| |||||||    
T  7328738 tattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 20549816 - 20549780
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20549816 gattttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 43027503 - 43027575
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||| | |||| ||||||||| |||||| ||||||| | ||||| || |||||||||    
T  43027503 gattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttca 43027575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 2948708 - 2948669
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatc 155  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  2948708 gattttctaaaattatcagcggtgtcggcgtgtcagtatc 2948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 6630897 - 6630982
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||| |||| ||| |||||||||  |||| | |||| || || || |||||||||||||||| |||||||||||||||||    
T  6630897 tgtccgacaccaacacgacatcgacacatataattacactgaatta-agtgactttctcaaattattagtggtgtcggcgtgtcagt 6630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 21828439 - 21828482
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  21828439 gattttctcaaattactaacggtgtcggcgtgtcagtgtccgtg 21828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 28155594 - 28155563
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||||||||||||||||||||||||||||    
T  28155594 attttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 5236010 - 5235960
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    ||||||| |||||||||||||||||| ||||||||| || ||| |||||||    
T  5236010 attttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 9933347 - 9933282
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattag 134  Q
    |||||||||||||||| |||| ||||||||| | || |||||||| | |||||| ||||||||||||    
T  9933347 tgtccgacaccgacacgacactgacacataagtttactgaaatat-gtgattttttcaaattattag 9933282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 20545270 - 20545312
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    |||||| |||||||||||||||||| |||||||| ||||||||    
T  20545270 gattttttcaaattattagcggtgttggcgtgtccgtatccgt 20545312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 26329418 - 26329476
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||||||||||| || ||||||||||||||| || ||| ||||||| | ||||||    
T  26329418 ttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgt 26329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 4017830 - 4017879
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    |||||||||||||||| | ||||||||||||| || |||||| |||||||    
T  4017830 ttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtcc 4017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  35 actatgaagcacggacactcctcgaattag 64  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 25791675 - 25791642
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||| |||||||||||||||||||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagt 25791642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 598233 - 598173
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||| ||||||||||||||||||  |||||||| |||||| | |||| || ||||||    
T  598233 gattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgt 598173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 11061110 - 11061162
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||||| ||||||| |||||||| |||||| ||| ||||    
T  11061110 gattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccg 11061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  36 ctatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 17851456 - 17851396
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||| |||||||||||||| |||  ||||| |||||| || ||||||||| ||||||    
T  17851456 gattttctaaaattattagcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgt 17851396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 22868067 - 22868031
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||| |||||||| |||||||||||||||||    
T  22868067 gattttctcatattattagtggtgtcggcgtgtcagt 22868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 22652050 - 22651948
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| ||| | |||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  22652050 tgtccgacaccgacacgacaccgacacttgtaattatattgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 22651952  T
Q  166 ccgg 169  Q
    ||||    
T  22651951 ccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 29510289 - 29510396
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| | | | |||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  29510289 tgtccgacaccgacactacaccgacacttgtaattatactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 29510387  T
Q  166 ccggagtcc 174  Q
    |||| ||||    
T  29510388 ccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 25192388 - 25192453
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||  ||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttca 25192453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 926822 - 926888
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 182  Q
    |||||||||||||||||||  |||| ||||||||||| |||||| ||||||||| |||||| |||||    
T  926822 gattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 27213572 - 27213519
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  27213572 gattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 31109552 - 31109595
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  31109552 gattttctcaaattattaacggtgtcggcgtgtcagtgtccgtg 31109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 24362236 - 24362298
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 178  Q
    |||| ||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||||    
T  24362236 gattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 126390 - 126435
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtccg 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 39954313 - 39954346
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||||||||||||||||||||    
T  39954313 gattttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 13436998 - 13437070
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || | ||||||| |||| | | |||||||||    
T  13436998 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttca 13437070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 31236611 - 31236651
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatcc 156  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  31236611 gattttctcaaattattagcagtgtcggcgtgtccgtatcc 31236651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 37283812 - 37283887
Alignment:
Q  83 ccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||||||||| | |||| ||| | |||||||||| ||||||||||||| | || ||||||| ||||||    
T  37283812 ccacaccgacacataattacactgaattat-gtgattttctcagattattagcggtgcccgcatgtcagtgtccgtg 37283887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 4673459 - 4673521
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 178  Q
    |||||| ||||||||||| | |||||||||||||||| || ||| ||||||||  ||||||||    
T  4673459 gattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtat 4673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 27101540 - 27101506
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||| ||||||||||||||||||||||||||||    
T  27101540 gattttttcaaattattagcggtgtcggcgtgtca 27101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 34897110 - 34897068
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    ||||||||||||||||||||||||||| |||||| || |||||    
T  34897110 gattttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 13844630 - 13844663
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||||| |||||||||||||    
T  13844630 gattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 2572090 - 2572150
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||  |||||| |||||| ||||||||| ||||||| | ||||||    
T  2572090 gattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgt 2572150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 4298920 - 4298972
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||| | |||||||||||| |||||| ||| ||||||||    
T  4298920 gattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtccg 4298972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 11944690 - 11944618
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||| | |||||||||||| || ||||||| |||||  || ||||||||  ||||||||    
T  11944690 gattttatcaaattattaacagtgtcggcgtgttagcatccgtgtcgtgtttggtgtccgtatctgtgcttca 11944618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 20873094 - 20873042
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||| |  ||||||||||||||| |||||| ||||||||    
T  20873094 gattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccg 20873042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 29776108 - 29776013
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtg 164  Q
    |||||||||| |||   ||||||||| ||||||||| |||| ||  | |||||||||||||||||||| |||||| | ||||| | |||||| ||||    
T  29776108 tgtccgacactgacttaacaccgacatataattatactgaattac-gtgattttctcaaattattagcagtgtcgacttgtcaatgtccgtgtcgtg 29776013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 21782817 - 21782924
Alignment:
Q  80 acaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtatt 179  Q
    |||| |||||| |||||||||| | |||| ||| | |||||||||||||||||||| |||||||||||||||| |  ||| ||||||| | ||| |||||    
T  21782817 acacgacaccggcacataattacactgaattat-gtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtatt 21782915  T
Q  180 cgtgcttca 188  Q
    |||||||||    
T  21782916 cgtgcttca 21782924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 33519800 - 33519739
Alignment:
Q  127 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||||||| |||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttca 33519739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 20539708 - 20539780
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||| |||||| ||||||||| |||||| ||||||| | |||||||| |||||||||    
T  20539708 gattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttca 20539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 4332981 - 4332891
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||| ||| | ||||||| |||||||||| | |||||||| ||| |||||| ||||||||||||| ||||||    
T  4332981 acaccgacacataattacattgaattat-gtgattttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccggtgtccgt 4332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 21616787 - 21616737
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  21616787 gattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 1328033 - 1327976
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcgg 143  Q
    ||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||    
T  1328033 acaccgacacataattatactgaattttat-gattttctcaaattattagcggtgtcgg 1327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 19536434 - 19536504
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||||  ||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttca 19536504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 36409614 - 36409711
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||| |||||| |||  ||||||||||||||||| | | || ||| | |||||| ||||||||| |||||||||||| ||| |||||||||| ||||||    
T  36409614 tgtcagacaccaacatgacaccgacacataattacactaaattat-gtgattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 18276570 - 18276486
Alignment:
Q  91 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||| | |||| || || ||||||||||||||||||||||||||||| | ||||| || ||  ||||||||| ||||||    
T  18276570 acacataattacactgaatta-agtgattttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 23718048 - 23717999
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccg 23717999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 24105720 - 24105671
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccg 24105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 19574078 - 19573970
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 135  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||  ||||     ||||||| | |||| ||| |  ||||||| ||||||||| |    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacacgccacc----tataattacactgaattat-gttattttcttaaattattatc 19573984  T
Q  136 ggtgtcggcgtgtc 149  Q
    ||||||||||||||    
T  19573983 ggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 44860394 - 44860320
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtc 141  Q
    ||||| ||||| |||| |||||||||||||  |||| | |||| ||| ||||||||||||||||||||||||||||    
T  44860394 tgtccaacaccaacacgacaccgacacatataattacactgaattat-gcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 18420417 - 18420506
Alignment:
Q  66 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtat 154  Q
    |||||||||||  ||||| ||||||||||  ||||||  | |||| ||| | |||||||||||||||||||| |||| |||||||||||||    
T  18420417 catgtccgacatggacacaacaccgacacttataattgcattgaattat-gtgattttctcaaattattagcagtgttggcgtgtcagtat 18420506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 21624282 - 21624219
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||||||||| |||||||||||||||| || ||| ||||| ||| |||||||| || ||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttca 21624219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 37411278 - 37411313
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcag 151  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37411278 gattttctcaaattattagcggtgtcggcatgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 28412404 - 28412315
Alignment:
Q  86 caccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||||||||||| | |||| ||| | |||||| ||||||||||| |||||| | ||||| ||| |||||| |||||| || ||||||    
T  28412404 caccgacacataattacactgaattat-gtgattttatcaaattattaacggtgttgacgtgttagtgtccgtgtcgtgtctggtgtccgt 28412315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 31018615 - 31018557
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 174  Q
    |||||||| |||||||||||||||| ||||||||||| ||| || ||| ||||| ||||    
T  31018615 gattttctgaaattattagcggtgttggcgtgtcagtgtccatgtcgtatccggtgtcc 31018557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 4142875 - 4142936
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 178  Q
    ||||||| ||||| |||| ||||||||||||||||| |||| | ||||| ||| ||||||||    
T  4142875 attttcttaaattgttagtggtgtcggcgtgtcagtgtccgggtcgtgttcggtgtccgtat 4142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 21091747 - 21091706
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  21091747 attttcttaaattattagcggtgtcggtgtgtcagtgtccgt 21091706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 38117193 - 38117259
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||| ||||||||||||||      ||| ||||||||| |||||||| |||||||||    
T  38117193 gattttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttca 38117259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 896236 - 896200
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  896236 gattttctcaaactattagcagtgtcggcgtgtcagt 896200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 2331863 - 2331776
Alignment:
Q  71 ccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||| ||||| |||||||||||||| || | |||| ||| | ||||||||||||||||||  |||||  |||||||| | ||||||    
T  2331863 ccgacactgacacgacaccgacacataaatacactgaattat-gtgattttctcaaattattaatggtgtttgcgtgtcaatgtccgtg 2331776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 10535794 - 10535842
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    ||||||||||||||||| |||||||||||| | |||||| ||| |||||    
T  10535794 attttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 30404884 - 30404936
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| | ||||||    
T  30404884 gattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccg 30404936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 31284073 - 31284041
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgt 148  Q
    |||||||||||||||||||| ||||||||||||    
T  31284073 gattttctcaaattattagcagtgtcggcgtgt 31284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 42832311 - 42832343
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||||||||||||| |||||    
T  42832311 attttctcaaattattagcggtgtcggtgtgtc 42832343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 6427375 - 6427323
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6427375 gattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 40917776 - 40917716
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  40917776 gattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 398799 - 398858
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccg 175  Q
    |||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  398799 gattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 2896155 - 2896207
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  2896155 gattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 10572535 - 10572690
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtcc--------gacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaa 126  Q
    |||||||||||||||||||| ||||||| | |||||        |||||| |||| ||||||||||||  ||||| |  ||| ||| | |||||||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtccacgtgcctgacaccaacacaacaccgacacatttaattacaccgaattat-gtgattttctcaa 10572633  T
Q  127 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtg 183  Q
    |||||||| ||||||||||||||||| | | || ||||||||| |||||||| ||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 5927374 - 5927444
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgctt 186  Q
    |||||| ||||||||||||| ||||  |||||||||| |||||| ||||||||| |||||||| |||||||    
T  5927374 gattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgctt 5927444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 5376535 - 5376588
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga 170  Q
    ||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||    
T  5376535 attttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga 5376588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 89  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 12443494 - 12443538
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 160  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12443494 gattttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17831565 - 17831601
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831565 gattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 36878486 - 36878450
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878486 gattttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 1486703 - 1486796
Alignment:
Q  77 ccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    ||||||| ||||||||||  ||||||| | |||| ||| | |||||| ||||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattat-gtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 38503386 - 38503285
Alignment:
Q  76 accgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtc 173  Q
    |||||||  |||||||||||||  |||| | |||||||||  |||||||||||||||||||||||||||| |||| ||| |||||| | ||||| | |||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatat-gattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtcatgtcccgtgtc 38503288  T
Q  174 cgt 176  Q
    |||    
T  38503287 cgt 38503285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 44482343 - 44482234
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagc-----catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaa 126  Q
    ||||||| ||||||||||||||||| ||||||     | |||||||||||||||| ||||||||||  ||||||| | |||| ||| | |||||||||||    
T  44482343 aactatggagcacggacactcctcggattagctgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat-gtgattttctcaa 44482245  T
Q  127 attattagcgg 137  Q
    ||||| |||||    
T  44482244 attataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 178  Q
    ||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 1262933 - 1262856
Alignment:
Q  91 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||| |||||||| |||| ||| | |||||||||||||||||||| ||||||||||||| || | |||| |||||||||    
T  1262933 acacttaattatattgaattat-gtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccgg 1262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9709845 - 9709795
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9709845 gattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 34298461 - 34298411
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    ||||||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  34298461 gattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 19562655 - 19562691
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19562655 gattttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 609493 - 609528
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| |||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 6415035 - 6415078
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||    
T  6415035 gattttctcaaataattagcgatgtcggcgtgtcagtgtccgtg 6415078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 46348417 - 46348460
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  46348417 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 46348460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 48450622 - 48450673
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||| ||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  48450622 attttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 3490426 - 3490460
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||| ||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagt 3490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 10475011 - 10475045
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    ||||||||||| |||||||||||||||||||||||    
T  10475011 gattttctcaagttattagcggtgtcggcgtgtca 10475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 15641064 - 15641130
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 182  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||| | ||||||  |||||| |||||    
T  15641064 gattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtgttcgt 15641130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 40285686 - 40285724
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  40285686 gcgattttctcaaattattagcggtgttggtgtgtcagt 40285724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 20157384 - 20157437
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    |||||||||| ||||||||||||||||  ||||||||  ||||| |||||||||    
T  20157384 gattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtccgg 20157437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 21530714 - 21530681
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||| |||||||||||||||    
T  21530714 gattttctcaaattattaacggtgtcggcgtgtc 21530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 25361960 - 25361881
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgt 146  Q
    |||||||||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||| || |||||||||||    
T  25361960 tgtccgacaccgacacgacactgacacatataattacactgaattat-gtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 41877505 - 41877534
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgt 146  Q
    ||||||||||||||||||||||||||||||    
T  41877505 attttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 9828118 - 9828036
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataa--ttataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||| ||||| ||||| ||||||||||||||  ||| | |||| ||| | |||||| |||||||||||| ||||||||||||||    
T  9828118 tgtctgacacggacacgacaccgacacataaaattacactgaattat-gtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 10577769 - 10577829
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||| |||  |||||| ||||||||||||| || |||||| ||||||||| ||||||    
T  10577769 gattttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgt 10577829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 18556497 - 18556533
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  18556497 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 18556533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 25452152 - 25452215
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||| | |||| ||| | |||||||||||||||||||| |||| ||| ||||    
T  25452152 acaccgacacataattacactgaattat-gagattttctcaaattattagcagtgttggcatgtc 25452215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 31015068 - 31014996
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||||| |||| |||| ||||||  ||||| |||| |||| ||| || | |||||||||    
T  31015068 gattttctcaaattattagctgtgtaggcgcgtcagtgcccgtgtcgtgcccggtgtctgtgtccgtgcttca 31014996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 20279 - 20125
Alignment:
Q  36 ctatgaagcacggac---actcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaatta 130  Q
    |||||||||||||||   |||||||| ||||| | |||||  ||||||||| |||| ||||| |  ||||| | |||| ||| | |||||| ||||||||    
T  20279 ctatgaagcacggactgtactcctcggattaggcgtgtcc--caccgacacgacactgacacttgtaattacactgaattat-gtgattttttcaaatta 20183  T
Q  131 ttagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    ||||| |||||||||||||| | |||||| ||||||||| ||||||||  ||||||||    
T  20182 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttca 20125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 21149 - 21002
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattatta 133  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | |||||||||||  ||||||  ||  ||| | ||||||||||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacatataattataccgacttat-gtgattttctcaaattatta 21051  T
Q  134 gcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 182  Q
     | ||||| || ||||||| |||||| |||||| || |||||| |||||    
T  21050 accgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgt 21002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 97  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 97  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 8383282 - 8383213
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgct 185  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||||| | |||||| | ||||||    
T  8383282 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgct 8383213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 5441029 - 5441128
Alignment:
Q  79 gacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga-gtccgta 177  Q
    ||||| ||||||||||||||||  | |||| ||| | |||||||||||||| ||||||||| |||||||||||| || ||| |||||||||| |||||||    
T  5441029 gacacaacaccgacacataattccattgaattat-gtgattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccggatgtccgta 5441127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 8039818 - 8039908
Alignment:
Q  66 catgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatc 155  Q
    |||||||||||||||||| |||||||||||||  |||| | |||| ||||   |||||||||||||||||||||||| ||||||||| ||||    
T  8039818 catgtccgacaccgacacgacaccgacacatataattacactgaattatata-attttctcaaattattagcggtgttggcgtgtcaatatc 8039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 24205076 - 24205135
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 5407261 - 5407325
Alignment:
Q  95 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 160  Q
    ||||||| |||||| ||| | |||||||||||||| ||||||||||||||||||| ||||||||||    
T  5407261 ataattacaatgaattat-gtgattttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 28918026 - 28917966
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||| ||||||    
T  28918026 gattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 4991002 - 4991061
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||| ||||||||||||||| |||||||| |||||| ||||| ||| ||||||    
T  4991002 attttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgt 4991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 8842346 - 8842283
Alignment:
Q  125 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||||| |||||||| |||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttca 8842283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 182  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 9800064 - 9800014
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    |||||||||||||||||| ||||||||||||||||| | |||| |||||||    
T  9800064 attttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgtgtcc 9800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 25064981 - 25064881
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 167  Q
    ||||||||||| |||| | ||| ||||||||||| | | || ||| | |||||| |||||| ||||||||||||||||||||| | || ||| |||||||    
T  25064981 tgtccgacaccaacacgataccaacacataattacactaaattat-gtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtcc 25064883  T
Q  168 gg 169  Q
    ||    
T  25064882 gg 25064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 2620087 - 2620139
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||    
T  2620087 gattttctcaaatgattagtggtgtcggcgtgtcagtgtccgagtcgtgtccg 2620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 8587055 - 8587127
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| |||||||| |||  |||||||||||||||| |||||| | ||||||| ||||||||  ||||||||    
T  8587055 gattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttca 8587127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 15796328 - 15796388
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| ||||||||| ||||||    
T  15796328 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 26492239 - 26492291
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  26492239 gattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 32429414 - 32429486
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||| |||||||||||| |||||| |||||| | | ||||  |||||||| |||||||| |||||||||    
T  32429414 gattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttca 32429486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 55401100 - 55401028
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||  |||||||||| ||||| |||||| ||| ||||| ||||||||  ||||||||    
T  55401100 gattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttca 55401028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 21720785 - 21720746
Alignment:
Q  120 ttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagtgtccgtg 21720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtcc 72  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 12674535 - 12674585
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||||||||||||||||| ||||||| |||||| | |||||| ||||||    
T  12674535 gattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtc 12674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 3865592 - 3865633
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  3865592 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 3865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 12704030 - 12703989
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  12704030 ttttctcaaattattagtggtgtcggcgtgtccatatccgtg 12703989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 34307794 - 34307846
Alignment:
Q  95 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||| | |||||||| | |||||||||||||||||||||||||| ||||||    
T  34307794 ataattacactgaaatat-gtgattttctcaaattattagcggtgtcagcgtgt 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 3164059 - 3164119
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||| |||| || | |||||| ||||||||| ||||||    
T  3164059 gattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgt 3164119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 4987325 - 4987361
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  4987325 gattttttcaaattattagctgtgtcggcgtgtcagt 4987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 6525714 - 6525750
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6525714 gattttctcaaattattagcggtgtcgacatgtcagt 6525750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 10318075 - 10318111
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  10318075 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 10318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 14832124 - 14832080
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 160  Q
    |||||| ||||||||||||| || |||||||||| ||||||||||    
T  14832124 gattttttcaaattattagctgtatcggcgtgtccgtatccgtgc 14832080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 21479143 - 21479107
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  21479143 gattttttcaaattattagctgtgtcggcgtgtcagt 21479107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 25074813 - 25074781
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtc 149  Q
    ||||||||||||||||| |||||||||||||||    
T  25074813 attttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 26290396 - 26290360
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||  |||||||||||||||||    
T  26290396 gattttctcaaattattaatggtgtcggcgtgtcagt 26290360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 26508135 - 26508083
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||||| ||||| ||||||||||||| ||  ||||||||    
T  26508135 gattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccg 26508083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 40052357 - 40052321
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  40052357 gattttttcaaattattagctgtgtcggcgtgtcagt 40052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 13425 - 13353
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||    
T  13425 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttca 13353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 21902 - 21974
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||    
T  21902 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttca 21974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 8823 - 8763
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  8823 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 178853 - 178929
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcacagt 192  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||| |||  ||| |||||||||||||    
T  178853 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcaatatccgtgcttcacagt 178929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 192284 - 192325
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  192284 attttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 225303 - 225362
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 241668 - 241559
Alignment:
Q  68 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    ||||||||||| |||| ||||||||||  ||||||| | | || ||| | ||||||  |||||||||||| |||||||||||||||| |||||| |||||    
T  241668 tgtccgacaccaacacgacaccgacactcataattacactaaattat-gtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 241570  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  241569 ccggtgtccgt 241559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 92831 - 92790
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 158  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  92831 attttctcaaattattagcggtgtcggcgtgtcagtgtccgt 92790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 53256 - 53170
Alignment:
Q  66 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcag 151  Q
    ||||||||||||||||||  |||||||||  ||||||| | |||| ||| | ||||||||||||||||| ||||| ||||||||||||    
T  53256 catgtccgacaccgacacggcaccgacacttataattacactgaattat-gtgattttctcaaattattggcggtatcggcgtgtcag 53170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 23293020 - 23293080
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 23293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 35723420 - 35723455
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723420 attttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagt 152  Q
    |||||||||||||||||||||||||||||||||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 847975 - 847918
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 174  Q
    |||||||||||||||||||||  ||||||||||||| || ||| ||||||||| ||||    
T  847975 attttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtcc 847918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 36635349 - 36635296
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 169  Q
    ||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||    
T  36635349 gattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 24343531 - 24343472
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | ||||||||||||| |  |||||| ||||||||| ||||||    
T  24343531 attttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgt 24343472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 30982863 - 30982967
Alignment:
Q  68 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 165  Q
    |||| ||||||||||| ||||||||||  ||||||| | |||||||| | ||||||||||||| |||||||||   |||||||| || |||||| ||| |    
T  30982863 tgtctgacaccgacacgacaccgacacttataattacactgaaatat-gtgattttctcaaatcattagcggt---ggcgtgtctgtgtccgtgtcgtat 30982958  T
Q  166 ccggagtcc 174  Q
    |||| ||||    
T  30982959 ccggtgtcc 30982967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 7012090 - 7012048
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    ||||||||||||||||| ||||||||||||||| || ||||||    
T  7012090 attttctcaaattattatcggtgtcggcgtgtcggtgtccgtg 7012048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 20521883 - 20521933
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 166  Q
    |||||| ||||||||||| |||| ||||||||||||| |||||| ||||||    
T  20521883 gattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtc 20521933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 20633508 - 20633450
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||| |||||||||||||||||||| ||||||||| |||||  |||||| || ||||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgt 20633450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 30299048 - 30298928
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattatta 133  Q
    ||||||||||||||||||||||| ||||| | |||||     || ||| |||||||||| |  ||||| | |||| |||  |  |||| |||||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtcc-----cggcacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattatta 30298954  T
Q  134 gcggtgtcggcgtgtcagtatccgtg 159  Q
    || |||||||||||||||| ||||||    
T  30298953 gctgtgtcggcgtgtcagtgtccgtg 30298928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 30327916 - 30327796
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattatta 133  Q
    ||||||||||||||||||||||| ||||| | |||||     || ||| |||||||||| |  ||||| | |||| |||  |  |||| |||||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtcc-----cggcacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattatta 30327822  T
Q  134 gcggtgtcggcgtgtcagtatccgtg 159  Q
    || |||||||||||||||| ||||||    
T  30327821 gctgtgtcggcgtgtcagtgtccgtg 30327796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 40613475 - 40613441
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtca 150  Q
    |||||||||||| ||||||||||||||||||||||    
T  40613475 gattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 28084544 - 28084475
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttc 187  Q
    |||| ||||||| ||||| |||||||||||||||  || ||| ||||||||| ||||||||  |||||||    
T  28084544 ttttttcaaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgtatctgtgcttc 28084475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 1747237 - 1747205
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgt 148  Q
    ||||||||||| |||||||||||||||||||||    
T  1747237 gattttctcaatttattagcggtgtcggcgtgt 1747205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 16184842 - 16184801
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||||||||||||||||||  |||||||||||||| ||||||    
T  16184842 gattttctcaaattattagcg--gtcggcgtgtcagtgtccgtg 16184801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 80  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 496 - 556
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||| ||||| ||| ||||||    
T  496 gattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgt 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 3340 - 3281
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||| ||||| |||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  3340 attttctaaaattgttagcattgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgt 3281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 51836 - 51793
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 159  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  51836 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 51793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 1669 - 1636
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtc 149  Q
    |||||||||||||||||| |||||||||||||||    
T  1669 gattttctcaaattattaacggtgtcggcgtgtc 1636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 17903 - 17936
Alignment:
Q  115 cgattttctcaaattattagcggtgtcggcgtgt 148  Q
    |||||||||||||||||||||||||| |||||||    
T  17903 cgattttctcaaattattagcggtgtaggcgtgt 17936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 28913 - 28830
Alignment:
Q  79 gacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgcc 161  Q
    ||||| |||||||||||||  |||| | |||| ||| |||||||||| ||||||||| |||||||||||||| ||| | ||||||    
T  28913 gacacaacaccgacacatataattacattgaattat-gcgattttcttaaattattaacggtgtcggcgtgttagtgttcgtgcc 28830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  36 ctatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 46707 - 46655
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| ||||||||    
T  46707 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccg 46655  T

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Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 82  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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