View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_3 (Length: 569)
Name: NF10028_3
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 105 - 569
Target Start/End: Original strand, 4097261 - 4097725
Alignment:
| Q |
105 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
204 |
Q |
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| T |
4097261 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
4097360 |
T |
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| Q |
205 |
atgcaacaaactacgaatttaacgaagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
304 |
Q |
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| T |
4097361 |
atgcaacaaactacgaatttaacgaagagacgggaaagcttgaagtcttcatccctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
4097460 |
T |
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| Q |
305 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttc |
404 |
Q |
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| T |
4097461 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtgacaaccattttc |
4097560 |
T |
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| Q |
405 |
tccgagggatcaaagctctatgtcactgctggcatgaagaaaacaaggagtagggaagcatatgatgtttcaagagatggtgtacctgtagataagttct |
504 |
Q |
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| T |
4097561 |
tccgagggatcaaagctctatgtgactgctggcatgaagaaaacaaggagtagggaagcatatgatgttacaagagatggtgtacctgtagataagttct |
4097660 |
T |
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| Q |
505 |
aaaactttcatatcataatctgtaaaagcctttcttgttttatacaccattttaagtctttttgt |
569 |
Q |
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| T |
4097661 |
aaaactttcatatgataatctgtaaaagcctttgttgttttatacaccattttaagtctttttgt |
4097725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4096102 - 4096183
Alignment:
| Q |
1 |
ggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttcctatttccatatgttgctcaaacatttatcttttcaa |
82 |
Q |
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| T |
4096102 |
ggcggaaccaaatggttggtcaacaaagtaaaaggtttctatttcctatttccatatgttgctcaaacatctatcttttcaa |
4096183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 129 - 506
Target Start/End: Complemental strand, 25796905 - 25796528
Alignment:
| Q |
129 |
tttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtgatgcaacaaactacgaatttaacg |
228 |
Q |
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| T |
25796905 |
tttgcaggaaagatgcaaaaaccattaacagagttgctgaaggagtatgatctaccaataggaatctttccccgtgacgcaacaaactacgagttcaatg |
25796806 |
T |
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| Q |
229 |
aagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgtttcttcaccaccgttactggttatct |
328 |
Q |
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| T |
25796805 |
aagaaacaagaaagcttgttgtttacattcctcaagtgtgtgaagtaggctatagagattcatcagtcttgcgcttcacaaccactgtttctggttactt |
25796706 |
T |
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| Q |
329 |
ggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttctccgagggatcaaagctctatgtc |
428 |
Q |
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| T |
25796705 |
ggagaaaggaaagctagctgatatagagggtatgaagaccaaagtgttggtgtgggtgaaagttaccgccatttcatccgagggaccaaagctgaacttc |
25796606 |
T |
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| Q |
429 |
actgctggcatgaagaaaacaaggagtagggaagcatatgatgtttcaagagatggtgtacctgtagataagttctaa |
506 |
Q |
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| T |
25796605 |
actgctggcatgaagaaaacaaggaaaagggaagcttatgaagtttctagagatggtgtaattatagataaattctaa |
25796528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 25797209 - 25797168
Alignment:
| Q |
4 |
ggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc |
45 |
Q |
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| T |
25797209 |
ggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc |
25797168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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