View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10028_4 (Length: 562)

Name: NF10028_4
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10028_4
NF10028_4
[»] chr6 (2 HSPs)
chr6 (2-552)||(32958474-32959024)
chr6 (215-291)||(29142931-29143007)
[»] scaffold0054 (1 HSPs)
scaffold0054 (442-550)||(38473-38579)
[»] chr3 (1 HSPs)
chr3 (107-212)||(49729760-49729865)


Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 2 - 552
Target Start/End: Complemental strand, 32959024 - 32958474
Alignment:
Q  2 gaaaatagaatcatttctttttctctaaccccaacggttcttaccactaatgcaacaacggtagaggatgcgggtttgaaatataaagtagctgacaaaa 101  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32959024 gaaaatagaataatttctttttctctaaccccaacggttcttaccactaatgcaacaacgatagaggatgcgggtttgaaatataaagtagctgacaaaa 32958925  T
Q  102 tatgacatagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaatttctgtcgagcaa 201  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32958924 tgtgacatagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaatttctgtcgagcaa 32958825  T
Q  202 catgtttggtttcctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcttatggtttctgcgagttggtgtgtacataggctt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32958824 catgtttggtttcctgtcatggttttagagtgttagtttcaggctgttgtgactgctagtttggcttatggtttctgcgagctggtgtgtacataggctt 32958725  T
Q  302 agagatttattttctgttggtgctaatgatgcattggaattcggtcatgacagtttttatgtgctttcctgcacttaccgttatttactctaaacaaacc 401  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32958724 agagatttattttcttttggtgctaatgatgtattggaattcggtcatgacagtttttatgtgctttcttgcacttaccgttatttactctaaacaaacc 32958625  T
Q  402 accacaaccatctcgaccaccatccttactcgtaccatccgtattcaacaagctcattcactcgtattccaatctgcaaccgctgaacttcattctctca 501  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32958624 accacaaacatctcgaccaccatccttactcgtaccatccgtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctca 32958525  T
Q  502 aaagaaaaggcgaacaacaactatataaatatgatgatattgccttctctg 552  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32958524 aaagaaaaggcgaacaacaactatatatatatgatgatattgccttctctg 32958474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 29142931 - 29143007
Alignment:
Q  215 ctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcttatggtttctgcgagttggtgtgt 291  Q
    |||||||||||||  |||| || |||| | |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  29142931 ctgtcatggttttgcagtggtaatttcggactgttctgactgctagtttggcttctggtttctgcgagctggtgtgt 29143007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 442 - 550
Target Start/End: Original strand, 38473 - 38579
Alignment:
Q  442 gtattcaacaagctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaaagaaaaggcgaacaacaactatataaatatgatgatat 541  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||| |  |||| | ||||||||||    
T  38473 gtattcaacaatctcattcactcgtattccaatctgcaaccgctgaacttcattctctcaaacaaaaaggtgaacaacagc--tatagacatgatgatat 38570  T
Q  542 tgccttctc 550  Q
    |||||||||    
T  38571 tgccttctc 38579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 49729760 - 49729865
Alignment:
Q  107 catagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaatttctgtcgagcaacatgt 206  Q
    |||| |||| |||||||||||||||| ||| ||||| |||||||| |||| ||  ||| ||||||||||||||||||||||||||  |||||||||||||    
T  49729760 cataattaaataacaaatttgttgtgctttgtggaacgtgacaagacagcgacggcgtgttttgggggagatgcgtcacaatttccatcgagcaacatgt 49729859  T
Q  207 ttggtt 212  Q
    ||||||    
T  49729860 ttggtt 49729865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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