View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_5 (Length: 549)
Name: NF10028_5
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_5 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 24 - 534
Target Start/End: Complemental strand, 26046562 - 26046056
Alignment:
| Q |
24 |
gttccggggtataagaaagatttggttagaattgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaaggaatttgatgaata |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26046562 |
gttccggggtataagaaagatttggttagaattgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaagaaatttgatgaata |
26046463 |
T |
|
| Q |
124 |
taaagtatctttcttcaatggttgatataagtttcaaaaataggtatatatatgttgatgttggagctagaagctatggttctagtataggatcttggtt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26046462 |
taaagtatctttcttcaatggttgatataagtttcaagaataggtatttatatgttgatgttggagctagaagctatggttctagtataggatcttggtt |
26046363 |
T |
|
| Q |
224 |
taggaaacaatatcctaaacagaataagacatttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttgaagaaagggcttact |
323 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26046362 |
taggaaacaatatcctaagcaaaataagacatttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttgaaaaaagggcttact |
26046263 |
T |
|
| Q |
324 |
ttggttccctatgctactcctctgggtgaagaatgagactttagcgtttgagattcatcgtgatccgggggagcatgttgaggttaaaggaagggggatg |
423 |
Q |
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|||||||| |||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26046262 |
ttggttccttatgctgct----tgggtgaagaatgagactttagctttcgagattcatcgtgatccgggggagcatgttgaggttaaaggaagggggatg |
26046167 |
T |
|
| Q |
424 |
ggtaggattcaacctttgcggtcgatagggaaggggtttgatggggaggtggagaagataaagggatttgattttgcgaattggttgaagaagacggttt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26046166 |
ggtaggattcaacctttgcggtcgatagggaaggggtttgatggggaggtggagaagataaagggatttgattttgcgaattggttgaagaagacggttt |
26046067 |
T |
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| Q |
524 |
cgaagaatgat |
534 |
Q |
| |
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||||||||||| |
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| T |
26046066 |
cgaagaatgat |
26046056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 56 - 326
Target Start/End: Original strand, 3696925 - 3697195
Alignment:
| Q |
56 |
tgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaaggaatttgatgaatataaagtatctttcttcaatggttgatataagt |
155 |
Q |
| |
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||||||| |||||||||| |||||||||||||||| ||||| || ||||| | |||| ||| ||||||||||||| |||||||||||||||||||| |
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| T |
3696925 |
tgctgaggaattgattgaagaggaaccattgaagccatggataactttgaagaagaatgtgaagaatataaagtatgcatcttcaatggttgatataagc |
3697024 |
T |
|
| Q |
156 |
ttcaaaaataggtatatatatgttgatgttggagctagaagctatggttctagtataggatcttggtttaggaaacaatatcctaaacagaataagacat |
255 |
Q |
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| T |
3697025 |
tttaagagtaggtatgtgtatgttgatgttggagctagaagctatggttcaagcattggaagctggtttaagaaacaatatccaaaacagaataagactt |
3697124 |
T |
|
| Q |
256 |
ttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttgaagaaagggcttactttg |
326 |
Q |
| |
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|| |||| ||||| |||||||| ||||| ||||||||| | ||||||| | |||| |||||| | |||||| |
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| T |
3697125 |
ttgatgtttatgcaattgaagctgataaacattttcatcaagagtatgtgatgaaaaaaggggtaactttg |
3697195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 21220022 - 21220085
Alignment:
| Q |
30 |
gggtataagaaagatttggttagaattgctgagccattgattgaaaaggaaccattgaagcctt |
93 |
Q |
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| T |
21220022 |
gggtataagaaagatttgattagaattgttgagccattgattgaaaaggaaccattgaaacctt |
21220085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 26957591 - 26957389
Alignment:
| Q |
81 |
ccattgaagccttggattacattgaaaaggaatttgatgaatataaagtatctttcttcaatggttgatataagtttcaaaaataggtatatatatgttg |
180 |
Q |
| |
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|||||||| || |||||| ||||||| || || |||| ||| |||||||| | ||||||||||||||||||||||||||| | ||| | ||||||| |
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| T |
26957591 |
ccattgaaaccatggattgcattgaagagaaacttgaagaacataaagtacttaacttcaatggttgatataagtttcaaaagcaattatgtttatgttg |
26957492 |
T |
|
| Q |
181 |
atgttggagctagaagctatggttctagtataggatcttggtttaggaaacaatatcctaaacagaataagacatttcatgtgtatgcgattgaagccga |
280 |
Q |
| |
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|| ||||||| |||||||||||||| || || ||| ||||| | ||||||||| || || |||||||| |||||| | || ||||| |||||||| || |
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| T |
26957491 |
atattggagcaagaagctatggttcaagcattggaagctggttcaagaaacaatacccaaagcagaataaaacatttgaagtttatgcaattgaagcaga |
26957392 |
T |
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| Q |
281 |
taa |
283 |
Q |
| |
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||| |
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|
| T |
26957391 |
taa |
26957389 |
T |
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