View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10028_6 (Length: 419)
Name: NF10028_6
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 407
Target Start/End: Complemental strand, 40508742 - 40508346
Alignment:
| Q |
11 |
cagagacaagaatactaagactgagattggttacatcgtatgtatatacactttttctcgcacacacatttaggcactctaatctagaacataagtactt |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40508742 |
cagagtcaagaatactaagactgagattggttacatcatatgtaaatacactttttctcgcacacacatttaggcactctaatctagaacataaggactt |
40508643 |
T |
|
| Q |
111 |
accttggttgtttgcctggacagtattagtaccgtacaacgttgggctactgtgactgagatcatcaactctacttgcaggccatgcagcaagattcgct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
40508642 |
accttggttgtttgcctggacagtattagtaccgtacaacgttgggctactgtgactgagatcatcaactctacttgcagcccatgcagcaagagtcgct |
40508543 |
T |
|
| Q |
211 |
ctggttgttaaaggaggaagcactccatttatggttctgcatgaggataacaaactgatcaaggtttacctatatacagtaaaatcacagattatagtag |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
40508542 |
ctggttgctaaaggaggaagcactccatttatggttctgcatgaggataacaaactgatcaaggtttacctatatacagtaaagtcacggattatagtag |
40508443 |
T |
|
| Q |
311 |
tagaaaccagcaagaaagataaaaacaacaagaaatttgtacgaatttagcttccctgttaaaatataaatctccctgccatatcagcctgaataat |
407 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40508442 |
tagaagccagcaagaaagataaaaacaacaagaaatttgtacgaatttagcttccctgttaaaatataaatctccctgccatatcagcctgaataat |
40508346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University