View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_8 (Length: 393)
Name: NF10028_8
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 37 - 393
Target Start/End: Original strand, 41208562 - 41208918
Alignment:
| Q |
37 |
ttggttttcaatttcatatctattttacaaattcttggttttgttccttttgtcattgaaattctttaacactgtatcacacaaatgtataagataagga |
136 |
Q |
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| T |
41208562 |
ttggttttcaatttcatatctattttacaaattcttggttttgttccttttgtcattgaaattctttaacactgtatcacacaaatgtataagataagga |
41208661 |
T |
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| Q |
137 |
cccctaatttatttgaccttcaatttgattgtcattctgatcctgttttcttaccaatcatggaatatttaatcaaatatataatcacattattattaat |
236 |
Q |
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| T |
41208662 |
cccctaatttatttgaccttcaatttgattgtcattctgatcctgttttcttaccaatcatggaatatttaatcaaatatataatcgcattattattaat |
41208761 |
T |
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| Q |
237 |
cttgaacaagtttctgtatcacatagtacannnnnnnnatagccaaaatttattggttagtagtcagggtttgaatcaggaacctcattctcaaactcct |
336 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41208762 |
cttgaacaagtttctgtatcacatagtacattttttttatagccaaaatttagtggttagtagtcagggtttgaatccggaacctcattctcaaactcct |
41208861 |
T |
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| Q |
337 |
tcaggtgtcctgaataaaccacttgagttatacattggggaccacatagtacattgt |
393 |
Q |
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| T |
41208862 |
tcaggtgtcctgaataaaccacttgagttatacattagggaccacatagtacattgt |
41208918 |
T |
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