View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_9 (Length: 380)
Name: NF10028_9
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_9 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 8401199 - 8401562
Alignment:
| Q |
1 |
atctatagttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401199 |
atctatagtacctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgt |
8401298 |
T |
|
| Q |
101 |
ggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8401299 |
ggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaagagaaaatggagatttatttgaaattaaattgg |
8401398 |
T |
|
| Q |
201 |
ctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgttgagggaactacagttgatgaatttgctagcaa |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401399 |
ctttgaaattgggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgttgagggaactacagttgatgaatttgctagcaa |
8401498 |
T |
|
| Q |
301 |
acttttctaagatttgtatttattttttcttgatctaacttaacaattcttgattcaattgtgat |
365 |
Q |
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| T |
8401499 |
acttttctaag-tctttagtttttttttcttgatctaacttaacaattcttgattcaattgtgat |
8401562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 8368211 - 8367848
Alignment:
| Q |
1 |
atctatagttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368211 |
atctatagtacctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgt |
8368112 |
T |
|
| Q |
101 |
ggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattgg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368111 |
ggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattgg |
8368012 |
T |
|
| Q |
201 |
ctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgttgagggaactacagttgatgaatttgctagcaa |
300 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368011 |
ctttgaaattgggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgttgagggaactacagttgatgaatttgctagcaa |
8367912 |
T |
|
| Q |
301 |
acttttctaagatttgtatttattttttcttgatctaacttaacaattc-ttgattcaattgtgat |
365 |
Q |
| |
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||||||||||| | | || || ||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8367911 |
acttttctaag-tctttagtt-ttttttcttgatctaacttaacaattctttgattcaattgtgat |
8367848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 8422776 - 8423144
Alignment:
| Q |
1 |
atctatagttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422776 |
atctatagtacctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgt |
8422875 |
T |
|
| Q |
101 |
ggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattgg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422876 |
ggtggattctttcaaatgatggaaagttcaattcaagagaatatattagaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattgg |
8422975 |
T |
|
| Q |
201 |
ctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaaaatcagcttattctcgtgttgagggaactacagttgatgaatttgctagcaa |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
8422976 |
ctttgaaattgggaagaagtttgtcacaattaagagatcttgctataaaatcagcttactctcgtgttgagggaactatagttgatgaatttgcaagcaa |
8423075 |
T |
|
| Q |
301 |
acttttctaa--gatttgtattta-ttttttcttgatctaacttaacaattc-ttgattcaattgtgat |
365 |
Q |
| |
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||||||||| | ||| |||| ||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
8423076 |
gcttttctaattgtttttagtttacttttttcttgatctaacttaacaattctttgattcaattatgat |
8423144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 8411934 - 8411863
Alignment:
| Q |
27 |
cattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
98 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8411934 |
cattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8411863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 8434032 - 8433961
Alignment:
| Q |
27 |
cattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
98 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8434032 |
cattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8433961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 8376053 - 8376156
Alignment:
| Q |
8 |
gttcctgttatggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggat |
107 |
Q |
| |
|
|||||| || ||||||| |||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| | |
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| T |
8376053 |
gttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggtt |
8376152 |
T |
|
| Q |
108 |
tctt |
111 |
Q |
| |
|
|||| |
|
|
| T |
8376153 |
tctt |
8376156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 8417024 - 8416952
Alignment:
| Q |
18 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgta |
90 |
Q |
| |
|
||||||| |||||||| |||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
8417024 |
tggctggttcattggcttctgcagttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 8431070 - 8431014
Alignment:
| Q |
42 |
ttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
98 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
8431070 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8431014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 8405823 - 8405743
Alignment:
| Q |
18 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
98 |
Q |
| |
|
||||||| |||||||| |||| | ||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
8405823 |
tggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtatagagctt |
8405743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 8403856 - 8403777
Alignment:
| Q |
29 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
108 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
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|
| T |
8403856 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
8403777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 8395749 - 8395829
Alignment:
| Q |
18 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
98 |
Q |
| |
|
||||||| |||||||| |||| | ||| ||||||| |||||||||||| |||| ||||||| ||||||||||||||||| |
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|
| T |
8395749 |
tggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtatagagctt |
8395829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 55336151 - 55336092
Alignment:
| Q |
49 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggatt |
55336092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 55330720 - 55330659
Alignment:
| Q |
48 |
cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc |
109 |
Q |
| |
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||||||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
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|
| T |
55330720 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc |
55330659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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