View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_low_1 (Length: 678)
Name: NF10028_low_1
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Original strand, 41208350 - 41208981
Alignment:
| Q |
18 |
gattcaattaatttgttgtgatgggtcctgtgagaggaaccaagaagaaaagaaagacagagaagacacatgacaataataacggttctggttctgcttc |
117 |
Q |
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| T |
41208350 |
gattcaattaacttgttgtgatgggtcctgtgagaggaaccaagaagagaagaaagacagagaagacacatgacaataataacggttctggttctgcttc |
41208449 |
T |
|
| Q |
118 |
tgggtcatctgagaaagagggtcttgtagattggtgggatgaattgtcaaagaagatcgacggtatatttcttggttttgttgatgcatcattgtttgct |
217 |
Q |
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| T |
41208450 |
tgggtcatctgagaaagagggtcttgtagattggtgggatgaattgtcaaagaagatcaacggtatatttcttggttttgttgatgcatcattgtttgct |
41208549 |
T |
|
| Q |
218 |
atgatgaatgtgtatctatttcttggttttcttggttttcaatttcatatctattttacaaattcttggttttgttccttttgtcattgaaattctttaa |
317 |
Q |
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| T |
41208550 |
atgatgaatgtgt-------------------tggttttcaatttcatatctattttacaaattcttggttttgttccttttgtcattgaaattctttaa |
41208630 |
T |
|
| Q |
318 |
cactgtatcacacagatgtataagataaggacccctaatttatttgaccttcaatttgattgtcattctgatcctgttttcttaccaatcatggaatatt |
417 |
Q |
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| T |
41208631 |
cactgtatcacacaaatgtataagataaggacccctaatttatttgaccttcaatttgattgtcattctgatcctgttttcttaccaatcatggaatatt |
41208730 |
T |
|
| Q |
418 |
taatcaaatatataatcacattattattaatcttgaacaagtttctgtatcacatagtacannnnnnnnatagccaaaatttattggttagtagtcaggg |
517 |
Q |
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| T |
41208731 |
taatcaaatatataatcgcattattattaatcttgaacaagtttctgtatcacatagtacattttttttatagccaaaatttagtggttagtagtcaggg |
41208830 |
T |
|
| Q |
518 |
tttgaatcaggaacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattggggaccacatagtacattgttgatggtgtacc |
617 |
Q |
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| T |
41208831 |
tttgaatccggaacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattagggaccacatagtacattgttgatggtgtacc |
41208930 |
T |
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| Q |
618 |
ttcaatttcaatggagatcgatgttttattctttattgtgatcagtctgtg |
668 |
Q |
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| T |
41208931 |
ttcaatttcaatggagatcgatgttttgttctttattgtgatcagtctgtg |
41208981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 41198373 - 41198523
Alignment:
| Q |
18 |
gattcaattaatttgttgtgatgggtcctgtgagaggaaccaagaagaaaagaaagacagagaagacacatgacaataataacggttctggttctgcttc |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
41198373 |
gattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataa------tgattctgcttc |
41198466 |
T |
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| Q |
118 |
tgggtcatctgagaaagagggtcttgtagattggtgggatgaattgtcaaagaagat |
174 |
Q |
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| T |
41198467 |
tgggtcatctgagaaagagggtgttgtagattggtgggatgaattctcaaagaagat |
41198523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 615
Target Start/End: Original strand, 41198868 - 41198954
Alignment:
| Q |
529 |
aacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattggggaccacatagtacattgttgatggtgta |
615 |
Q |
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| T |
41198868 |
aacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgta |
41198954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 41198597 - 41198634
Alignment:
| Q |
193 |
ttttgttgatgcatcattgtttgctatgatgaatgtgt |
230 |
Q |
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| T |
41198597 |
ttttgctgatgaatcattgtttgctatgatgaatgtgt |
41198634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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