View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_low_2 (Length: 556)
Name: NF10028_low_2
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_low_2 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 32958487 - 32959024
Alignment:
| Q |
1 |
atcatcatatttatatagttgttgttcgccttttcttttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatacgg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32958487 |
atcatcatatatatatagttgttgttcgccttttcttttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatacgg |
32958586 |
T |
|
| Q |
101 |
atggtacgagtaaggatggtggtcgagatggttgtggtggtttgtttagagtaaataacggtaagtgcaggaaagcacataaaaactgtcatgaccgaat |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32958587 |
atggtacgagtaaggatggtggtcgagatgtttgtggtggtttgtttagagtaaataacggtaagtgcaagaaagcacataaaaactgtcatgaccgaat |
32958686 |
T |
|
| Q |
201 |
tccaatgcatcattagcaccaacagaaaataaatctctaagcctatgtacacaccaactcgcagaaaccataagccaaactagcagtcagaacagcctga |
300 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32958687 |
tccaatacatcattagcaccaaaagaaaataaatctctaagcctatgtacacaccagctcgcagaaaccataagccaaactagcagtcacaacagcctga |
32958786 |
T |
|
| Q |
301 |
aactaacactctaaaaccatgacaggaaaccaaacatgttgctcgacagaaattgtgacgcatctcccccaaaatacgttgttgctgccttgtcacattc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32958787 |
aactaacactctaaaaccatgacaggaaaccaaacatgttgctcgacagaaattgtgacgcatctcccccaaaatacgttgttgctgccttgtcacattc |
32958886 |
T |
|
| Q |
401 |
cataaaacacaacaaatttgttaattaactatgtcatattttgtcagctactttatatttcaaacccgcatcctctaccgttgttgcattagtggtaaga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32958887 |
cataaaacacaacaaatttgttaattaactatgtcacattttgtcagctactttatatttcaaacccgcatcctctatcgttgttgcattagtggtaaga |
32958986 |
T |
|
| Q |
501 |
accgttggggttagagaaaaagaaatgattctattttc |
538 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
32958987 |
accgttggggttagagaaaaagaaattattctattttc |
32959024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 29143007 - 29142931
Alignment:
| Q |
249 |
acacaccaactcgcagaaaccataagccaaactagcagtcagaacagcctgaaactaacactctaaaaccatgacag |
325 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||| | |||| || |||| ||||||||||||| |
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| T |
29143007 |
acacaccagctcgcagaaaccagaagccaaactagcagtcagaacagtccgaaattaccactgcaaaaccatgacag |
29142931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 38557 - 38473
Alignment:
| Q |
14 |
tatagttgttgttcgccttttcttttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatac |
98 |
Q |
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||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38557 |
tatagctgttgttcacctttttgtttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatac |
38473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 328 - 433
Target Start/End: Complemental strand, 49729865 - 49729760
Alignment:
| Q |
328 |
aaccaaacatgttgctcgacagaaattgtgacgcatctcccccaaaatacgttgttgctgccttgtcacattccataaaacacaacaaatttgttaatta |
427 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |||||||| ||||| ||| |||||||||||||||| ||| |
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| T |
49729865 |
aaccaaacatgttgctcgatggaaattgtgacgcatctcccccaaaacacgccgtcgctgtcttgtcacgttccacaaagcacaacaaatttgttattta |
49729766 |
T |
|
| Q |
428 |
actatg |
433 |
Q |
| |
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| |||| |
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| T |
49729765 |
attatg |
49729760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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