View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10028_low_3 (Length: 279)
Name: NF10028_low_3
Description: NF10028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10028_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 37347005 - 37347270
Alignment:
| Q |
1 |
aggaagaggttcaatcactggttcagagtttcagttcacaagagacaggttagctttctatgacaaagaatgttccagaatcgctgaacatgtttaccta |
100 |
Q |
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| T |
37347005 |
aggaagaggttcaatcactggttcagagtttcagttcacaagagacaggttagctttctatgacaaagaatgttccagaatcgctgaacatgtttaccta |
37347104 |
T |
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| Q |
101 |
ggaagcgacacagtggcgaagaatcatgaggttttaagaaagaatgggattactcacgtgcttaattgtgttgggtttgtctgtcctgaatatttcaaaa |
200 |
Q |
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| T |
37347105 |
ggaagcgacacagtggcgaagaatcatgaggttttaagaaagaatgggattactcacgtgcttaattgtgttgggtttgtctgtcctgaatatttcaaaa |
37347204 |
T |
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| Q |
201 |
gtgaatttgtttataaaactctttggttgcaggatagtccaacagaagatataacaagtattttgt |
266 |
Q |
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| T |
37347205 |
gtgaatttgtctataaaactctttggttgcaggatagtccaacagaagatataacaagtattttgt |
37347270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 39219862 - 39220095
Alignment:
| Q |
29 |
tttcagttcacaagagacaggttagctttctatgacaaagaatgttccagaatcgctgaacatgtttacctaggaagcgacacagtggcgaagaatcatg |
128 |
Q |
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| T |
39219862 |
tttcagttcaaaagagataaattagctttctttgacaaagagtgttcaagaattgctgaacatatttacttgggaagtgacacagtggccaaaaaccatg |
39219961 |
T |
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| Q |
129 |
aggttttaagaaagaatgggattactcacgtgcttaattgtgttgggtttgtctgtcctgaatatttcaaaagtgaatttgtttataaaactctttggtt |
228 |
Q |
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| T |
39219962 |
aacttctcagagaaaaaggaataacacatgtgcttaactgtgttggttttgtttgtcccgagtatttcaaaagtgattttgagtacaaaacactttggtt |
39220061 |
T |
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| Q |
229 |
gcaggatagtccaacagaagatataacaagtatt |
262 |
Q |
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|||||| |||||||| |||||||||||||||||| |
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| T |
39220062 |
gcaggacagtccaactgaagatataacaagtatt |
39220095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 7599096 - 7599169
Alignment:
| Q |
142 |
gaatgggattactcacgtgcttaattgtgttgggtttgtctgtcctgaatatttcaaaagtgaatttgtttata |
215 |
Q |
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||||||||||||||| || | ||||||||||| ||||| |||||||| ||||| ||| |||| ||||| |||| |
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| T |
7599096 |
gaatgggattactcatgttttgaattgtgttggttttgtgtgtcctgagtattttaaaggtgattttgtgtata |
7599169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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