View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10029_low_4 (Length: 407)

Name: NF10029_low_4
Description: NF10029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10029_low_4
NF10029_low_4
[»] chr5 (5 HSPs)
chr5 (1-226)||(35025292-35025518)
chr5 (3-212)||(37851668-37851878)
chr5 (279-367)||(35025144-35025232)
chr5 (3-212)||(37838339-37838549)
chr5 (18-212)||(37832816-37833011)
[»] chr7 (4 HSPs)
chr7 (1-212)||(36867020-36867232)
chr7 (317-367)||(16666815-16666865)
chr7 (317-367)||(17641185-17641235)
chr7 (316-366)||(9209639-9209689)
[»] chr6 (2 HSPs)
chr6 (279-339)||(16001114-16001174)
chr6 (279-367)||(26853394-26853482)
[»] chr4 (1 HSPs)
chr4 (279-339)||(33580363-33580423)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35025518 - 35025292
Alignment:
Q  1 aaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35025518 aaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctggcaaatttttaagaccgaatcttaccatttcccattagt 35025419  T
Q  101 ttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttc 199  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35025418 ttaattacaagtccatcacaatattgcatcttatcactcattagcttaaacaagttcttattataaaagccaataacatctttaatggtcggcctccttc 35025319  T
Q  200 gtggatccttctcctgctgtcatagca 226  Q
    || ||||||||||||||||||||||||    
T  35025318 gttgatccttctcctgctgtcatagca 35025292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 37851878 - 37851668
Alignment:
Q  3 ggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagttt 102  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||  | || ||||| | || ||||||||||||||||||| ||||     
T  37851878 ggaagatcaaactagaccaagcataggttatttttggaacaactagattcgctatgccaaaaacttttttatactgaatcttaccatttcccatcagttc 37851779  T
Q  103 aattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttcgt 201  Q
     | |||||||||||||| ||||||||||| ||||  ||| | |||||||| ||||||||||| |||||| |||||| |||| ||||| | |||| |||||    
T  37851778 cactacaagtccatcaccatattgcacctcatcatacctcatcttaaacaggttcttattataaaagcctataacaactttcatggttgtcctctttcgt 37851679  T
Q  202 ggatccttctc 212  Q
    |||||||||||    
T  37851678 ggatccttctc 37851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 279 - 367
Target Start/End: Complemental strand, 35025232 - 35025144
Alignment:
Q  279 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 367  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025232 ccggtatgtcggagacatttgtatttgttatgctctcgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 35025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 37838549 - 37838339
Alignment:
Q  3 ggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagttt 102  Q
    ||||||||||| | ||||||||||||||||||||  ||| ||||||||||  |||||  ||||  |||| || | | |  |||||||||||||| |||||    
T  37838549 ggaagatcaaaattggccaagcataggttatttttggaagaactagattcaatacgccaacaaccttttgagccagcaatttaccatttcccatcagttt 37838450  T
Q  103 aattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattataaa-gccaataacatctttaatggtcggcctccttcgt 201  Q
    ||||  ||||||   || |||||| || | ||||| |||||||||||||| ||  |||||||||| | ||||||||||||| ||||||||||||||||||    
T  37838449 aattgaaagtcctataccatattgaacttcatcacaccttagcttaaacaggtagttattataaaagtcaataacatctttcatggtcggcctccttcgt 37838350  T
Q  202 ggatccttctc 212  Q
    |||||||||||    
T  37838349 ggatccttctc 37838339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 37833011 - 37832816
Alignment:
Q  18 gccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagtttaattacaagtccatc 117  Q
    |||||||||| ||||||||  ||| || ||||   ||||| ||||| ||||||  ||||  ||||||||| |||||||| |||||||||  |||||||||    
T  37833011 gccaagcataagttatttttggaagaattagagcagctaccctgaccaattttacagactcaatcttaccgtttcccatcagtttaattgtaagtccatc 37832912  T
Q  118 acaatattgcaccttatcactccttagcttaaacaagttcttatt-ataaagccaataacatctttaatggtcggcctccttcgtggatccttctc 212  Q
     | |||||| |||| ||||| ||| |||||||||||||| ||||| | ||| | ||||||| |||| |||||||||||   |||||||||||||||    
T  37832911 gccatattgaacctcatcacacctcagcttaaacaagttgttattaaaaaaacgaataacacctttcatggtcggcctatctcgtggatccttctc 37832816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 36867232 - 36867020
Alignment:
Q  1 aaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttcccattagt 100  Q
    |||||||||||||||||||||| ||||| |||||||  ||||| |||||||||||| |||| | ||||||| ||||  ||||||||||||||||||||||    
T  36867232 aaggaagatcaaactaggccaaacatagtttatttttggaacagctagattcgctatgctggcgaatttttcagacaaaatcttaccatttcccattagt 36867133  T
Q  101 ttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttc 199  Q
    ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||| ||||||||||||| ||||| ||||||||||    
T  36867132 ttaattacaagtccatcacaatatttcaccttatcacacctcagcttaaacaagttcgtattataaaaggcaataacatctttcatggttggcctccttc 36867033  T
Q  200 gtggatccttctc 212  Q
    |||||||||||||    
T  36867032 gtggatccttctc 36867020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 16666815 - 16666865
Alignment:
Q  317 agtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 367  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||||    
T  16666815 agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt 16666865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 17641185 - 17641235
Alignment:
Q  317 agtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 367  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||||    
T  17641185 agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt 17641235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 9209689 - 9209639
Alignment:
Q  316 gagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgatt 366  Q
    |||||||||||||  |||||||||||||||  | |||||||||||||||||    
T  9209689 gagtttgttgtgcatcttgtacactctcgacgtgaataaattttgctgatt 9209639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 16001114 - 16001174
Alignment:
Q  279 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacac 339  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||  |||||||||    
T  16001114 ccggtatgtcgtagacgtttgtatttgttatgctctcgagtttgttgtgcttcttgtacac 16001174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 367
Target Start/End: Original strand, 26853394 - 26853482
Alignment:
Q  279 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 367  Q
    ||||||||||||||||  |||||| ||||   |||| |||||||||||||| | |||||||||||||| |||||||| |||||||||||    
T  26853394 ccggtatgtcggagacaattgtatatgtttgcctctcgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt 26853482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 33580423 - 33580363
Alignment:
Q  279 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacac 339  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||  |||||||||    
T  33580423 ccggtatgtcggagacgcttgtatttgttatgctctcgagtttgttgtgcttcttgtacac 33580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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