View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10029_low_5 (Length: 387)
Name: NF10029_low_5
Description: NF10029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10029_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 17221399 - 17221298
Alignment:
| Q |
106 |
ttatccaagccatcacaacctttgtttatctttgcatttgtggaactaatgggatgatttatgatctcaaacgtttaagtgtagagcatttaacaattga |
205 |
Q |
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| T |
17221399 |
ttatccaagccatcacaacctttgtttatctttgcatttgtggaactaatgggatgattgatgatctcaaacgtttaagtgtagagcatttaacaattga |
17221300 |
T |
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| Q |
206 |
ag |
207 |
Q |
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|| |
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| T |
17221299 |
ag |
17221298 |
T |
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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 17221008 - 17220932
Alignment:
| Q |
203 |
tgaagccaaacatatttcaccttccctgtgtcccattcaccccggaaagtttctatttgtggttgaaacacaaacct |
279 |
Q |
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| T |
17221008 |
tgaagccaaacatatttcaccttccttgtgtcccattcgccccgaaaagtttctatttgtggttgaaacacaaacct |
17220932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 17212266 - 17212191
Alignment:
| Q |
204 |
gaagccaaacatatttcaccttccctgtgtcccattcaccccggaaagtttctatttgtggttgaaacacaaacct |
279 |
Q |
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| T |
17212266 |
gaagccaaatatatttcaccttccctgtgtcccattcgccctggaaagtttctatttgtggttgaaacacaaacct |
17212191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 17211550 - 17211470
Alignment:
| Q |
276 |
accttctgtgttgcagggacgaaaaatgttggaactttgacctttttaccctgcgaatacagttatgatgttctacattag |
356 |
Q |
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| T |
17211550 |
accttctgtgttgcagggacaagaaatgtgggaactttgacctttttaccctgcaaatacagatatcatgttattcattag |
17211470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17222254 - 17222203
Alignment:
| Q |
1 |
ctaattttatatttgactatttgaggttggttaatattaaccatctcaacaa |
52 |
Q |
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| T |
17222254 |
ctaattttatatttgactatttgaggttggttaatatcaaccatctcaacaa |
17222203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 17212715 - 17212658
Alignment:
| Q |
56 |
taagaatatcatcccaaattttctatttctataaacagttgttagaagatttatccaa |
113 |
Q |
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| T |
17212715 |
taagaatatcatttcaatttttctatttctataaacacttgttagaaaagttatccaa |
17212658 |
T |
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