View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10029_low_6 (Length: 378)
Name: NF10029_low_6
Description: NF10029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10029_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 2515117 - 2515439
Alignment:
| Q |
11 |
caaaggactaatgcatgtcaatatcagagaatcaaaaaacatctctataaatcttcaaaaatctctaaatcctctaaacccttatacacataagagaatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2515117 |
caaaggactaatgcatgtcaatatcagagaatcaacaaacatctctataaatcttcaaaaatctctaaatcctctaaacccttatatacataacagaatg |
2515216 |
T |
|
| Q |
111 |
acattcaagattcatgattatgaagtcaaaaagaaaaaccctatcattggttgtttgaacaaagtaaaacataatcagtaggtcaaaaatcaaaattttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515217 |
acattcaagattcatgattatgaagtcaaaaagaaaaaccctatcattggttgtttgaacaaagtaaaacataatcagtaggtcaaaaatcaaaattttc |
2515316 |
T |
|
| Q |
211 |
catatgaaaaagatgatcataaagccacctctagaaagccattgttcgcgcctaacatcaagcttgatttgcttcagttttgccgagccattagtctgaa |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2515317 |
catatgaaaatgatgatcataaagccacctctagaaagccattgttcgcgcctaacatcaagcttgatttgcttcagtttcgccgagccattagtctgaa |
2515416 |
T |
|
| Q |
311 |
aaatcacaatacgataagccaac |
333 |
Q |
| |
|
|| ||||||||| |||||||||| |
|
|
| T |
2515417 |
aattcacaatacaataagccaac |
2515439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University