View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10029_low_7 (Length: 243)
Name: NF10029_low_7
Description: NF10029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10029_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35025101 - 35024879
Alignment:
| Q |
1 |
cgatatgtcagttttaggttcaaaaaatctctttctatacccatgcacacatcttcctccaagaatcacctttgtttcatataggtcaaacttgacatgc |
100 |
Q |
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| T |
35025101 |
cgatacgtcagttttaggttcaaaaaatctctttctatacccatgcacgcatcttcctccaagaatcacctttgtttcatataggtcaaacttgacatgc |
35025002 |
T |
|
| Q |
101 |
ggcatttctggagatttgctttcaagcttttgatccatatacacaattttggcacatgtgagtgatttttagtcattttgtacttccattatgaacttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35025001 |
ggcatttctggagatttgctttcaagcttttgatccatatacacaattttggcacatgtgagtgatttttagtcattttgtacttccattatgaacttga |
35024902 |
T |
|
| Q |
201 |
ctctggcatgtgataatgtttta |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
35024901 |
ctctggcatgtgataatgtttta |
35024879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 37838996 - 37839184
Alignment:
| Q |
2 |
gatatgtcagttttaggttcaaaaaatctctttctatacccatgcacacatcttcctccaagaatcacctttgtttcatataggtcaaacttgacatgcg |
101 |
Q |
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||||||| |||||||| ||| | | || | ||||| ||| |||||||| ||||||||||||||| || | |||||||| | || ||||||||| ||||| |
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| T |
37838996 |
gatatgttagttttagattccacagatttgtttctgtacatatgcacacttcttcctccaagaattacatctgtttcattttggccaaacttgatatgcg |
37839095 |
T |
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| Q |
102 |
gcatttctggagatttgctttcaagcttttgatccatatacacaattttggcacatgtgagtga-tttttagtcattttgtacttccatt |
190 |
Q |
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|| | ||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
37839096 |
gcctatctggaggatttcttt-aagcttttgatccatacacacaactttggcacatgtgagtgagtttttagtcattttgcgcttccatt |
37839184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 37852195 - 37852259
Alignment:
| Q |
139 |
atacacaattttggcacatgtgagtgatttttagtcattttgtacttccattatgaacttgactc |
203 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||| |||| ||| |||||||||||| |
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| T |
37852195 |
atacacaattttggcacatgtgagtgacttttagacattttgtgcttctattctgaacttgactc |
37852259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 36867677 - 36867899
Alignment:
| Q |
2 |
gatatgtcagttttaggttcaaaaaatctctttctatacccatgcacacatcttcctccaagaatcacctttgtttcatataggtcaaacttgacatgcg |
101 |
Q |
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|||||||||||||||||||||||||||||| || | ||||||||||||| ||||||| ||||||| |||||||||||||| || ||||||||| ||| | |
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| T |
36867677 |
gatatgtcagttttaggttcaaaaaatctcattatgtacccatgcacacctcttcctacaagaattacctttgtttcatacagtccaaacttgatatgtg |
36867776 |
T |
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| Q |
102 |
gcatttctggagatttgctttcaagcttttgatccatatacacaattttggcacatgtgagtgatttttagtcattttgtacttccattatgaactt-ga |
200 |
Q |
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| | ||||||| ||| |||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
36867777 |
ccgtgtctggaggttttctttcaagcttttgatccatgtacacaagtttggcacacgtgagtgacttttagtcattttgtacttccattatgaacttgga |
36867876 |
T |
|
| Q |
201 |
ctctggcatgtgataatgtttta |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36867877 |
ctctggcatgtgataatgtttta |
36867899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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