View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10030_high_11 (Length: 300)
Name: NF10030_high_11
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10030_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 49520610 - 49520340
Alignment:
| Q |
14 |
agagcacaaaagtctagaagattcatgatctatgttcattccaagatgatgataggtaagatgccaaataatcctataatatatatttggcataatttac |
113 |
Q |
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| T |
49520610 |
agagcacaaaagtctagaagattcatgatctatgttcattccaagatgatgataggtaagatgctaaataatcctataatatatatttggcataatttac |
49520511 |
T |
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| Q |
114 |
atttttgagcatcgaattgtgcatagagactaacattgattgtttgctttattttgttcctgtagtggatgatgaatacatagtgattggttcagcaaac |
213 |
Q |
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| T |
49520510 |
atttttgagcatcgaattgtgcatagagactaacattgattgtttgctttattttgttcctgtagtggatgatgaatacatagtgattggttcagcaaac |
49520411 |
T |
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| Q |
214 |
ataaaccaaagatcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacctcatcatct |
284 |
Q |
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| T |
49520410 |
ataaaccaaagatcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacctcatcatct |
49520340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 49509171 - 49509077
Alignment:
| Q |
181 |
gatgatgaatacatagtgattggttcagcaaacataaaccaaagatcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacc |
275 |
Q |
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| T |
49509171 |
gatgatgaatacataatcattggttctgccaacataaatcaaagatcaatggatggtgcaagagacagtgagattgcaataggtgcatttcaacc |
49509077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 49509464 - 49509405
Alignment:
| Q |
14 |
agagcacaaaagtctagaagattcatgatctatgttcattccaagatgatgataggtaag |
73 |
Q |
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| T |
49509464 |
agagcacaaaattctagaagattcatgatatatgttcatgccaaaatgatgataggtaag |
49509405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 44663124 - 44663162
Alignment:
| Q |
35 |
ttcatgatctatgttcattccaagatgatgataggtaag |
73 |
Q |
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| T |
44663124 |
ttcatgatctatgttcatgccaagatgatgataggtaag |
44663162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 44663620 - 44663702
Alignment:
| Q |
181 |
gatgatgaatacatagtgattggttcagcaaacataaaccaaagatcaatggatggtggaagagacacagagattgcaatggg |
263 |
Q |
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| T |
44663620 |
gatgatgaatacataattgtcggatctgccaacatcaaccaaagatcaatggatggtgctagagactctgaaattgcaatggg |
44663702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 2415934 - 2415896
Alignment:
| Q |
35 |
ttcatgatctatgttcattccaagatgatgataggtaag |
73 |
Q |
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| T |
2415934 |
ttcatgatatatgttcataccaagatgatgataggtaag |
2415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 5401739 - 5401783
Alignment:
| Q |
28 |
tagaagattcatgatctatgttcattccaagatgatgataggtaa |
72 |
Q |
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| T |
5401739 |
tagaagattcatggtttatgttcattccaagctcatgataggtaa |
5401783 |
T |
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