View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10030_high_16 (Length: 251)

Name: NF10030_high_16
Description: NF10030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10030_high_16
NF10030_high_16
[»] chr4 (5 HSPs)
chr4 (15-230)||(4405016-4405251)
chr4 (70-131)||(10209176-10209239)
chr4 (67-117)||(30853480-30853532)
chr4 (70-99)||(33225946-33225975)
chr4 (70-131)||(35555729-35555789)
[»] chr8 (3 HSPs)
chr8 (67-100)||(24399901-24399934)
chr8 (70-117)||(4011223-4011272)
chr8 (70-131)||(16351518-16351580)
[»] chr6 (1 HSPs)
chr6 (41-131)||(10617313-10617405)
[»] chr7 (3 HSPs)
chr7 (41-101)||(14593871-14593931)
chr7 (70-99)||(44401238-44401267)
chr7 (41-101)||(16013394-16013454)
[»] chr5 (2 HSPs)
chr5 (42-131)||(33667547-33667638)
chr5 (44-139)||(17213188-17213285)
[»] chr3 (5 HSPs)
chr3 (41-134)||(11581555-11581650)
chr3 (70-141)||(27893229-27893302)
chr3 (73-116)||(44133938-44133983)
chr3 (71-99)||(21427695-21427723)
chr3 (63-99)||(36820090-36820126)
[»] chr1 (2 HSPs)
chr1 (41-100)||(10272369-10272428)
chr1 (41-98)||(51584855-51584912)
[»] chr2 (1 HSPs)
chr2 (67-99)||(18188889-18188921)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 4405251 - 4405016
Alignment:
Q  15 taaggagaatatatcttagggagaatagtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaaga-ctaaagattaat 113  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||| || |||||    
T  4405251 taaggagaatatatcgtagggagaatagtcaaatcactatatgtaggagagtacttaaaaaaattataagagaaactattaagaagacctagaggttaat 4405152  T
Q  114 gagtatgagaaagacatgattattga------------aacgccgttcgatttatatagtggactctacttaatgaaataaaact---tagttgttgtat 198  Q
    ||||||||||||||||||||||||||            |||||||||||||||||||||   |||||||||||||||||||||||   | ||||||||||    
T  4405151 gagtatgagaaagacatgattattgataaaaacattataacgccgttcgatttatatagcaaactctacttaatgaaataaaacttggttgttgttgtat 4405052  T
Q  199 cattaaa----ttattagatactctgcagttagcaa 230  Q
    |||||||    |||||||||||||||||||||||||    
T  4405051 cattaaattatttattagatactctgcagttagcaa 4405016  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 10209176 - 10209239
Alignment:
Q  70 tagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 131  Q
    |||||||| ||||||||||||||||||||||   ||| ||||||||||||  ||||||||||||    
T  10209176 tagaaaaactataagagaaactattaagaaggatctagagattaatgagttggagaaagacatg 10209239  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 30853480 - 30853532
Alignment:
Q  67 acttagaaaaattataagagaaactattaagaaga--ctaaagattaatgagt 117  Q
    ||||||||||| ||||||||||||||||| ||| |  ||||||||||||||||    
T  30853480 acttagaaaaactataagagaaactattatgaaaaatctaaagattaatgagt 30853532  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 33225975 - 33225946
Alignment:
Q  70 tagaaaaattataagagaaactattaagaa 99  Q
    ||||||||||||||||||||||||||||||    
T  33225975 tagaaaaattataagagaaactattaagaa 33225946  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 35555789 - 35555729
Alignment:
Q  70 tagaaaaattataagagaaactattaagaagactaaagattaatgagtatgagaaagacatg 131  Q
    |||||||| ||||||||||||||||||| || ||| |||| |||||||  ||||||||||||    
T  35555789 tagaaaaactataagagaaactattaag-agtctagagataaatgagttggagaaagacatg 35555729  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 24399934 - 24399901
Alignment:
Q  67 acttagaaaaattataagagaaactattaagaag 100  Q
    ||||||||||||||||||||||||||||||||||    
T  24399934 acttagaaaaattataagagaaactattaagaag 24399901  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 4011223 - 4011272
Alignment:
Q  70 tagaaaaattataagagaaactattaag-aaga-ctaaagattaatgagt 117  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  4011223 tagaaaaactataagagaaactattaagaaagatctaaagattaatgagt 4011272  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 16351518 - 16351580
Alignment:
Q  70 tagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 131  Q
    |||||||| ||| ||||||||||||||||||   ||| |||||||||||| |||||||||||||    
T  16351518 tagaaaaactattagagaaactattaagaaggatctagagattaatgagt-tgagaaagacatg 16351580  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 10617405 - 10617313
Alignment:
Q  41 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 131  Q
    ||||||||||||| | |||| | || || |||||||| |||||||||||| |||||||||   ||| ||||||||||||  ||||||||||||    
T  10617405 agtcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaaggatctagagattaatgagttggagaaagacatg 10617313  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 14593871 - 14593931
Alignment:
Q  41 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaaga 101  Q
    ||||||||||||| | |||||  || || |||||||| |||||||||||||||||||||||    
T  14593871 agtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaagaaga 14593931  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 44401267 - 44401238
Alignment:
Q  70 tagaaaaattataagagaaactattaagaa 99  Q
    ||||||||||||||||||||||||||||||    
T  44401267 tagaaaaattataagagaaactattaagaa 44401238  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 16013394 - 16013454
Alignment:
Q  41 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaaga 101  Q
    ||||||||||| | | |||||  || || |||||||| |||||||||||||||||||||||    
T  16013394 agtcaaatcaccagaggtaggggaagacctagaaaaactataagagaaactattaagaaga 16013454  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 33667547 - 33667638
Alignment:
Q  42 gtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 131  Q
    |||||||||||| |||||||  || || |||||||| ||||||||||  ||||||||||   ||| ||||||||||||  ||||||||||||    
T  33667547 gtcaaatcactagatgtaggggaagacctagaaaaactataagagaagttattaagaaggatctagagattaatgagttggagaaagacatg 33667638  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 17213188 - 17213285
Alignment:
Q  44 caaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatgattattga 139  Q
    |||||||||| |||| ||| || ||||||||||| || |||| |||||||||| |||   ||| ||||||||||||  ||||||||||| ||| ||||    
T  17213188 caaatcactagatgtgggagaaaacttagaaaaactagaagaaaaactattaacaaggatctagagattaatgagttagagaaagacataatttttga 17213285  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 11581555 - 11581650
Alignment:
Q  41 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaag-aaga-ctaaagattaatgagtatgagaaagacatgatt 134  Q
    ||||||||||||| | ||| || || || |||||||| ||||||||||||||||||| |||| ||| |||| |||||||   ||||||||||||||    
T  11581555 agtcaaatcactagaggtatgagaagacctagaaaaactataagagaaactattaagaaagatctatagataaatgagttgaagaaagacatgatt 11581650  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 27893229 - 27893302
Alignment:
Q  70 tagaaaaattataagagaaactattaagaaga--ctaaagattaatgagtatgagaaagacatgattattgaaa 141  Q
    |||||| | |||||||||||||||||| |||   ||| ||||||||||||  ||||||||||||||| ||||||    
T  27893229 tagaaagactataagagaaactattaaaaaggacctagagattaatgagttggagaaagacatgatttttgaaa 27893302  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 44133983 - 44133938
Alignment:
Q  73 aaaaattataagagaaactattaaga-aga-ctaaagattaatgag 116  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  44133983 aaaaattataagagaaactattaagatagatctaaagattaatgag 44133938  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 21427723 - 21427695
Alignment:
Q  71 agaaaaattataagagaaactattaagaa 99  Q
    |||||||||||||||||||||||||||||    
T  21427723 agaaaaattataagagaaactattaagaa 21427695  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 36820126 - 36820090
Alignment:
Q  63 aaatacttagaaaaattataagagaaactattaagaa 99  Q
    |||||| |||||||| |||||||||||||||||||||    
T  36820126 aaatacctagaaaaactataagagaaactattaagaa 36820090  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 10272369 - 10272428
Alignment:
Q  41 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag 100  Q
    ||||||||||||| | |||||  || || ||||||| |||||||||||||||||||||||    
T  10272369 agtcaaatcactagaggtaggggaagacctagaaaacttataagagaaactattaagaag 10272428  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 51584855 - 51584912
Alignment:
Q  41 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaaga 98  Q
    ||||||||||||| | |||||  || || |||||||| ||||||||||||||||||||    
T  51584855 agtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaaga 51584912  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 18188889 - 18188921
Alignment:
Q  67 acttagaaaaattataagagaaactattaagaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  18188889 acttagaaaaattataagagaaactattcagaa 18188921  T

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